PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968885.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 570aa    MW: 63876.1 Da    PI: 6.5403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.21.3e-1091985691374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs..elykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+lL++cAeav+ +d++ a++lLa+l+ +a   g+++qR+a++f+++L  rla  ++   +  a+p+++ +   s+++  al+l +ev+P ++f
  XP_024968885.1 198 LVQLLISCAEAVACRDKAHATTLLAELRANALVFGSSFQRVASCFMQGLTDRLALVQPlgAVGLAIPATSLNVVASEKKEEALHLVYEVCPHIQF 292
                     689**************************************************9844411444555666666666999999999*********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     +h++aN +Ilea+ege+ vH++D++++    +G QW aL+++La+ p +    lRiT+vg+      ++ + +g+ L+ +A+elg+++e+++ v+
  XP_024968885.1 293 GHFVANFTILEAFEGESFVHVVDLGMTlglpHGHQWRALIESLANHPgQALRLLRITAVGP----CVNRFHIIGDELEAYAQELGIKMEISF-VE 382
                     ***********************98873333788*************4445699*******....***************************.79 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     ++le+l++e++++ ++E+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fd+l+a lp+ 
  XP_024968885.1 383 SSLETLKPEDIKTYENEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDALDAMLPKY 474
                     9******************************88877777...8**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                     +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF++ p++   ++qak  l+k +  +gy++ ee+gslvlgWk++p+v++S+
  XP_024968885.1 475 DTRRAKIEQFYFAEEIKNIVSCEGPNRVERHERVDQWRRRMSRAGFQATPVK--LMAQAKQWLAKLEiCEGYTIVEEKGSLVLGWKSKPIVAASC 567
                     **************************************************96..799************************************** PP

            GRAS 373 Wr 374
                     W+
  XP_024968885.1 568 WK 569
                     *8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    
MAHLFMGHPL YSDQRWNHLK VGVNGVDPRF KLGGTKRKAE RWVSLESSLQ VGTPGFLENP  60
LYAHDEDEDD VQAHITTNEA DLGQDHSISP FYTQCYLSVL DNPASHWQLP GLFNIPFGHK  120
KMKRTVSMPE TSAGNSSLLD GVNVTIHRSS SSNSFPKLRF RDHIWTYTQR YLAAEAIENG  180
ILENRPVENE GNVDGMHLVQ LLISCAEAVA CRDKAHATTL LAELRANALV FGSSFQRVAS  240
CFMQGLTDRL ALVQPLGAVG LAIPATSLNV VASEKKEEAL HLVYEVCPHI QFGHFVANFT  300
ILEAFEGESF VHVVDLGMTL GLPHGHQWRA LIESLANHPG QALRLLRITA VGPCVNRFHI  360
IGDELEAYAQ ELGIKMEISF VESSLETLKP EDIKTYENEV LVVNSILQLH CVVKESRGAL  420
NSVLQIIHEL SPKVLVLVEQ DSSHNGPFFL GRFMEALHYY SAIFDALDAM LPKYDTRRAK  480
IEQFYFAEEI KNIVSCEGPN RVERHERVDQ WRRRMSRAGF QATPVKLMAQ AKQWLAKLEI  540
CEGYTIVEEK GSLVLGWKSK PIVAASCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-71GRAS family protein