PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968667.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family Trihelix
Protein Properties Length: 278aa    MW: 32862.3 Da    PI: 6.8967
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.31.3e-2530112186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ qe+++L+ +r+e++ ++ ++k++k lWe +s km+e g +rs++qCk kw+nl +ryk ++++e ++    ++++p++++l+
  XP_024968667.1  30 QWSVQETRDLLMIRSELDPTFMETKRNKLLWEVISTKMKEMGHNRSAEQCKAKWKNLVTRYKGCETMEHDG---MRQQFPFYNDLQ 112
                     7********************************************************************97...56679*****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MDHGHLHHMH TSSVGVDPSI ASGSNDRFPQ WSVQETRDLL MIRSELDPTF METKRNKLLW  60
EVISTKMKEM GHNRSAEQCK AKWKNLVTRY KGCETMEHDG MRQQFPFYND LQAIFSARIQ  120
RMLWMEAEGV ASGSKKRVMQ LSSDDDDDDD KEEISDPEKT TSTGAKNKKK KVVKSGTVIK  180
NPSGTISNNT KEMLEEFMNQ QMQMDLQWLK TFEAKEEERR SKEMEWRQTM EALENERMML  240
DQRWREREEQ RMMRDEVRSE KRDALITALL NKLKRQDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-66Trihelix family protein