PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968506.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 311aa    MW: 35614.9 Da    PI: 7.1085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.5e-50321573128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                     pGfrFhP deelv +yL +kve++++++ e ike+diyk++PwdLpk  +a+ekewyfF++r +ky+++ r+nr+t sg+Wkatg d++++s  +
  XP_024968506.1  32 PGFRFHPLDEELVGFYLLRKVENRPISM-ELIKEIDIYKYDPWDLPKGSNAGEKEWYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSGdG 125
                     9***************************.99***************999999****************************************845 PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                     +  +glkk+Lv+y+g+a kg+kt+W+mhe+rl
  XP_024968506.1 126 SVCIGLKKSLVYYRGSAGKGTKTEWMMHEFRL 157
                     556***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MDTQKQQLLN SKYSHNYNRQ LVDDQEEDVP LPGFRFHPLD EELVGFYLLR KVENRPISME  60
LIKEIDIYKY DPWDLPKGSN AGEKEWYFFC RRGRKYRNSI RPNRVTGSGF WKATGIDRPI  120
YSGDGSVCIG LKKSLVYYRG SAGKGTKTEW MMHEFRLPPP HSDNQIDDKS IALEAEVWTL  180
CRILKRSPSH KKTLPEWREI STSKSPPVVD TSSGDSDYDM QSYISFQAPV INENKPFVHT  240
HHQQQHLHGS NQLIMGQLTS STVTSDQPPS TTASCSSFSG LDVNQFIKHG DWDDLRSVVG  300
QFSVADPFSF T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-89NAC family protein