PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968393.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 399aa MW: 44827.5 Da PI: 7.0863

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.3e-40	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhrrh++C hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL+ hn+rrr++q+ XP_024968393.1 152 RCQVEGCNLDLSSAKDYHRRHRICANHSKSPKVVVAGMERRFCQQCSRFHDLSEFDDRKRSCRRRLSAHNARRRRPQS 229 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MDWNLNTPTE WDWENLAIYS SKEIEVTKNL QLSSHESQEH EPVDNVDFSF SASADSSSKE 60 TIKTFGVFDD LHKSFLEKEE PSWVGENGRF SNMVEEASVF SGEAMIGLKL GRHGSSSSSN 120 NKTATASVSL FPTTSPMIKR SRASYLSSQS PRCQVEGCNL DLSSAKDYHR RHRICANHSK 180 SPKVVVAGME RRFCQQCSRF HDLSEFDDRK RSCRRRLSAH NARRRRPQSE DIQFSSTRMS 240 SSICDRRPQM NFLLNRASIP IMDSTVPPES SCNFKGEESL LGLAKDGGID VLPTNGALHF 300 SSERFMPRNV NHNGMDSTSN PLLSGDVRHA FSLLSTSSWS SNWPDQASSF DQFAHGNSTI 360 SLGQPGMPLN LQNTTSSSTH LQDFHSFRSP HEFERFYSN

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MDWNLNTPTE WDWENLAIYS SKEIEVTKNL QLSSHESQEH EPVDNVDFSF SASADSSSKE  60
TIKTFGVFDD LHKSFLEKEE PSWVGENGRF SNMVEEASVF SGEAMIGLKL GRHGSSSSSN  120
NKTATASVSL FPTTSPMIKR SRASYLSSQS PRCQVEGCNL DLSSAKDYHR RHRICANHSK  180
SPKVVVAGME RRFCQQCSRF HDLSEFDDRK RSCRRRLSAH NARRRRPQSE DIQFSSTRMS  240
SSICDRRPQM NFLLNRASIP IMDSTVPPES SCNFKGEESL LGLAKDGGID VLPTNGALHF  300
SSERFMPRNV NHNGMDSTSN PLLSGDVRHA FSLLSTSSWS SNWPDQASSF DQFAHGNSTI  360
SLGQPGMPLN LQNTTSSSTH LQDFHSFRSP HEFERFYSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	226	RKRSCRRRLSAHNARRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	5e-35	SBP family protein