PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024968035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27120.4 Da PI: 7.1165 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ eEdell ++v ++G ++W++I++ ++ gR++k+c++rw + XP_024968035.1 12 KGPWSSEEDELLGKLVDRHGARNWTLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ + +a++++G++ W+tIar ++ gRt++ +k++w++ XP_024968035.1 66 SFTETEDKVIMEAHARFGNK-WATIARLLN-GRTDNAVKNHWNST 108 69******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence |
MDSSRSDLDR IKGPWSSEED ELLGKLVDRH GARNWTLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRSFTET EDKVIMEAHA RFGNKWATIA RLLNGRTDNA VKNHWNSTLK RKCTAMDVGE 120 GGERETRVPR RSESGGVDVT MTMPSSPSGS DVCDSGNNIP FLSMVKNHTT SHRFQPKIET 180 APSTTLTLSL PGTSSYPYDQ QANAKEANAT PFGAEILSVM QEMIRKEVRK YMEDEEESLM 240 QV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 8e-74 | MYB family protein |