PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024967774.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | ARF | ||||||||
Protein Properties | Length: 986aa MW: 109705 Da PI: 6.5409 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.3 | 1.3e-22 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_024967774.1 129 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDSVWTFRHIFRGQPKRHLLTTGWSLFVSGKRLSAGDSVLFI--RDEK 220 99*****************************9445444.38************************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_024967774.1 221 QQLLLGIRRA 230 889****997 PP | |||||||
2 | Auxin_resp | 114 | 1.4e-37 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekveka.lkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka +++++s+GmRf+m+fete+s +rr++Gt++g++dld vrW+nS+Wr+++ XP_024967774.1 255 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAaCSNQLSLGMRFRMMFETEESGTRRYMGTITGINDLDGVRWKNSQWRNIQ 338 79***************************98776167********************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 986 aa Download sequence |
MKVPGVTLIA TNHGEGAEKF MINPELWQAC AGPLVNLPAA GTHVVYFPQG HSEQVSASMK 60 KGMDAQIPSY PNLQSKLLCI LHNVTLHADP ETDEVYAQLT LQPVTAFDKE ALLRSDLSMK 120 SYKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELV ARDLHDSVWT 180 FRHIFRGQPK RHLLTTGWSL FVSGKRLSAG DSVLFIRDEK QQLLLGIRRA TRQPTNLSSS 240 VLSSDSMHIG VLAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAAC SNQLSLGMRF 300 RMMFETEESG TRRYMGTITG INDLDGVRWK NSQWRNIQVG WDESTAGERR NRVSIWEIEP 360 VTAPFFICPT PFYGLNRQRY PGIPDGESAD LDNFFKRTMP WVGEDMSMKD TGLSLVQWMN 420 MQQSSIQSNH LNPLAAPVLQ NYGGPDMSRI LPHDSLQFNS LRSTAQLDQL KNQLVPSTVN 480 PLASMMQPLQ QLASPSLQTT KQNVVNQSLP QNRVQSHIQP QNALQQQSSV QNPQLHRNLP 540 QQMAEVSQSQ QKISLPPEFP DQQQLQMPEN QVQHLQKLHQ RQQSLLAHQS AQLQPQDQQK 600 PLADQQQMLR NNSQTNIWFT HLSQQPKQTD QLLTYGNGLL MGTAATGGQS GITDDVPSGS 660 TSPSTNNGPI MLPSVIDGRS YRSTSMGGEE ITQASAHLMN TSGLETVSPN IEFFKELQQK 720 SGMKPSDNIS ESQNKGFIAP QIYLHHVFGT QVGYLDSSSS GTSVCVSQND VHLQQQNSNQ 780 LSFDSQPLPI QGGEVEDDHI PFGTNNENHL GMIPDPLITK RMMGCGKDFQ NNQPDVSSQS 840 FGVPDMSFNS IDSTINGGSL LNSGVWAPVP AQPQPFQRMR TYTKVYKRGA VGRSIDITAY 900 SGYKELKQDL ARRFGIEGQL EDRQRIGWKL VYVDHENDVL LVGDDPWEEF VSCVCYIKIL 960 SPQEVQQMSL DGDFGHPNQP CTSSDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |