PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024967044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26907 Da PI: 6.0946 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.8e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+teEd +lv++++++G +W + + + g+ Rt+k+c++rw +yl XP_024967044.1 14 KGFWSTEEDRKLVNYIRKYGISNWCKMSLYAGLSRTGKSCRLRWMNYL 61 688*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.4 | 7e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE++ +++++ lG++ W++Iar+++ gR+++++k++w++ XP_024967044.1 67 RGNFTNEEEKTILQYHSILGNR-WSAIARKVP-GRSDNEIKNHWHTN 111 89********************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MRDPSCDSQS GLRKGFWSTE EDRKLVNYIR KYGISNWCKM SLYAGLSRTG KSCRLRWMNY 60 LNPNIIRGNF TNEEEKTILQ YHSILGNRWS AIARKVPGRS DNEIKNHWHT NLKKRIITQD 120 HPVPTIKPKE TTKSIDLHDV ESSVETPTSH VFSSLSDGDT TSLCKLDISS RYDHEQLEVE 180 NESDYHISSP GTILDIKSFW EQLYYADEDL ELQNLFQDTS FDQIFIDNLY S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 3e-49 | MYB family protein |