PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024967034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 24579.2 Da PI: 6.3971 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +lv+++ +G +W + +++ g+ Rt+k+c++rw +yl XP_024967034.1 14 KGSWSAEEDRKLVNYISTYGISNWCKMSSYAGLSRTGKSCRLRWMNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.7e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++++++++ lG++ W++Iar+++ gR+++++k++w+++l XP_024967034.1 67 RGNFTDEEEKIILHYHSVLGNR-WAAIARKIP-GRSDNEIKNHWHTHL 112 89********************.*********.************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence |
MRTPSYDLRP SLRKGSWSAE EDRKLVNYIS TYGISNWCKM SSYAGLSRTG KSCRLRWMNY 60 LNPEIKRGNF TDEEEKIILH YHSVLGNRWA AIARKIPGRS DNEIKNHWHT HLKKRINYPL 120 SITEPEEITK SSDLDDDESS VESSVEPADC FFSSTVSNGH TSSSCIFDMS SRSYHEQQEV 180 KLETGYNYDI SSPGTIQDIK SFWEQLYYAN YD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06180.1 | 3e-48 | MYB family protein |