PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024966970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HB-other | ||||||||
Protein Properties | Length: 516aa MW: 58351.6 Da PI: 8.9845 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.8e-18 | 19 | 75 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t++q+++Le+++++++yp+++++ eLA+++gLte+qV+ WF+ rR k+kk XP_024966970.1 19 KQKRIVKTPSQVTALENFYNEHKYPTEAMKLELAESIGLTEKQVSGWFCHRRLKDKK 75 67999**************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence |
MEESREVHTD ENRALPEKKQ KRIVKTPSQV TALENFYNEH KYPTEAMKLE LAESIGLTEK 60 QVSGWFCHRR LKDKKSPNDE VQAHGKQDRS SGVIQDRGSG LRQDSCGSTK QGDNKLSDPK 120 EVESRRFTAE GLLPTELRYE HGSQHNSVMD DDTSSGSSSP LKDNFHPQNV DRLGTVTSKY 180 PTHNDVKSIK GRVGPSGYLK VKGQVENAAI TAVKRQLGRH YREDGPPLGI EFEPLPPGAF 240 ENPVKIPVNQ SYYVGDRTAL HSLDGSKTFQ LPNTSKMYER YNPKSYHPTD LDESGLEMRH 300 ASKHREKHSD SQYKQTPPLS KHRSSLSGRS LQMEVNDDSA GETSVHDLRE HIEMRTKHGP 360 GVKRPDSLSN RHLIAYGKNI DGKQAENYPR SHNSGTPKVI YRDRIEPITS DLIINRSEFV 420 ESEDRGLSRK TPKDDEFNGQ RRGIDEYSKL VSAKIHPGNE MRVIKRSRDE FTQQGYPRKE 480 AVFDISPRIT KIKRSTVQMT SSFSDDETAE TTSSGD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-84 | HB-other family protein |