PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966889.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 520aa MW: 58750.1 Da PI: 8.9845

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.8e-18	19	75	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t++q+++Le+++++++yp+++++ eLA+++gLte+qV+ WF+ rR k+kk XP_024966889.1 19 KQKRIVKTPSQVTALENFYNEHKYPTEAMKLELAESIGLTEKQVSGWFCHRRLKDKK 75 67999**************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MEESREVHTD ENRALPEKKQ KRIVKTPSQV TALENFYNEH KYPTEAMKLE LAESIGLTEK 60 QVSGWFCHRR LKDKKSPNDE VQAHGKQDRS SGVIQDRGSG LRQDSCGSTK QGDNKLSDPK 120 EVESRRFTAE GLLPTELRYE HGSQHNSVMD DDTSSGSSSP LKDNFHPQNV DRLGTVTSKY 180 PTHNDVKSIK GRVGPSGYLK VKGQVENAAI TAVKRQLGRH YREDGPPLGI EFEPLPPGAF 240 ENPVKIPVNQ SYYVGDRTAL HSLDGSKTFQ LPNTSKMYER YNPKSYHPTD LDESGLEMRH 300 ASKHREKHSD SQYKQTPPLS KHRSSLSGRS LQMEVNDDSA GETSVHDLRE HIEMRTKHGP 360 GVKRPDSLSN RHLIAYGKNI DGKQAENYPR SHNSGTPKVI YRDRIEPITS DLIINRSEFV 420 ESEDRGLSRK TPKDDEFNGQ RRGIDEYSKL VSAKIHPGNE MRVNNAVIKR SRDEFTQQGY 480 PRKEAVFDIS PRITKIKRST VQMTSSFSDD ETAETTSSGD

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MEESREVHTD ENRALPEKKQ KRIVKTPSQV TALENFYNEH KYPTEAMKLE LAESIGLTEK  60
QVSGWFCHRR LKDKKSPNDE VQAHGKQDRS SGVIQDRGSG LRQDSCGSTK QGDNKLSDPK  120
EVESRRFTAE GLLPTELRYE HGSQHNSVMD DDTSSGSSSP LKDNFHPQNV DRLGTVTSKY  180
PTHNDVKSIK GRVGPSGYLK VKGQVENAAI TAVKRQLGRH YREDGPPLGI EFEPLPPGAF  240
ENPVKIPVNQ SYYVGDRTAL HSLDGSKTFQ LPNTSKMYER YNPKSYHPTD LDESGLEMRH  300
ASKHREKHSD SQYKQTPPLS KHRSSLSGRS LQMEVNDDSA GETSVHDLRE HIEMRTKHGP  360
GVKRPDSLSN RHLIAYGKNI DGKQAENYPR SHNSGTPKVI YRDRIEPITS DLIINRSEFV  420
ESEDRGLSRK TPKDDEFNGQ RRGIDEYSKL VSAKIHPGNE MRVNNAVIKR SRDEFTQQGY  480
PRKEAVFDIS PRITKIKRST VQMTSSFSDD ETAETTSSGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-82	HB-other family protein