PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966522.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 352aa MW: 39046.7 Da PI: 7.8724

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.9	5.7e-55	18	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv + +++ +++++vd++k+ePw+Lp+++k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ XP_024966522.1 18 LPPGFRFHPTDEELITCYLLRKVLDGSFTG-RAFSDVDLNKCEPWELPQRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSS 111 79***********************999.88***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++l+g+kktLvfy+grapkgek++Wvmheyrle XP_024966522.1 112 kTSALIGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 146 56778**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MEFFSHHFDS TTGSEGCLPP GFRFHPTDEE LITCYLLRKV LDGSFTGRAF SDVDLNKCEP 60 WELPQRAKMG EKEWYFFSLR DRKYPTGLRT NRATEAGYWK ATGKDREIYS SKTSALIGMK 120 KTLVFYRGRA PKGEKSNWVM HEYRLEGKFA YHFLSKSSKD EWVISRVFKK SGAGVGVVAA 180 AGKKWLTGGG MSYGKELSSS SGVSGSLPPL LDSSAYTSAY TSERESFSYD SNPTSKEHVP 240 CFSTASTTNF GPHQTLFDIP PPEPLTSTFD PTTMCHPKPT TLSAFPSLRT LQENLHLPFI 300 YSSVAAPPMH GGDTSNNYGS SSGENWLPPS TSASQTDNQK PGPTELDCIW SF

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MEFFSHHFDS TTGSEGCLPP GFRFHPTDEE LITCYLLRKV LDGSFTGRAF SDVDLNKCEP  60
WELPQRAKMG EKEWYFFSLR DRKYPTGLRT NRATEAGYWK ATGKDREIYS SKTSALIGMK  120
KTLVFYRGRA PKGEKSNWVM HEYRLEGKFA YHFLSKSSKD EWVISRVFKK SGAGVGVVAA  180
AGKKWLTGGG MSYGKELSSS SGVSGSLPPL LDSSAYTSAY TSERESFSYD SNPTSKEHVP  240
CFSTASTTNF GPHQTLFDIP PPEPLTSTFD PTTMCHPKPT TLSAFPSLRT LQENLHLPFI  300
YSSVAAPPMH GGDTSNNYGS SSGENWLPPS TSASQTDNQK PGPTELDCIW SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	3e-98	NAC family protein