PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966452.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 683aa MW: 74770.3 Da PI: 6.514

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2.2e-32	283	340	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers+ +++++ei+Y+g Hnh+k XP_024966452.1 283 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSH-EGHITEIIYKGAHNHPK 340 7**************************************.*************85 PP
2	WRKY	103.3	1.4e-32	485	543	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+ XP_024966452.1 485 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCTVRKHVERASHDLKSVITTYEGKHNHD 543 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MGGFDDHGGI IGDWMPPSSS PRSFFAAMLG DDSGSRTVSE PPPKPDNNND SGFTFPGPDR 60 QGGSENGDGN QRGLTVDQAT KKGEFGEQRM SSRADSLQNQ QVRSPYLTIP PGLSPTSLLD 120 SPVFLSNSLV QPSPTTGKFQ FAPNGNGKSS MMFLDSSNRN KDNFFEDPNN SSFAFKPFPD 180 HVNPPFMSTQ SFQTNEALVQ PEKQFPPQKI EVAQNETSSL HIRADFPRSS TEKKPEANFL 240 TPFESFNGNS ERNVQRLEDH DDDDADQRIS GDNANNAISA SSEDGYNWRK YGQKQVKGSE 300 YPRSYYKCTH PNCLVKKKVE RSHEGHITEI IYKGAHNHPK LAPNRRSGIG SSIALSDMQS 360 AINEQGGNGV DGGPSWGTNM QKGNGHWSQE SSNLEVTSSG LVMQGQNGQF ESSEAVDGSS 420 TFSNDEEEDD RATHGSVSLA YDGEGDESES KRRKVEAYAA DVSGATRAIR EPRVVVQTTS 480 EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSTGCTVRK HVERASHDLK SVITTYEGKH 540 NHDVPAARNS SHANNTMAAQ ALSIHPQVHM PEPSRIQNTM ARFDRPPFGL PGGPQLGPTP 600 THGYGFAMSQ QGPGGLAHMA MANHGKMPVL PVHHYLGQPR QMNEMGFVLP KGEPKVEPMS 660 DPGLNGAPMY HQMMNRLPLG PQM

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MGGFDDHGGI IGDWMPPSSS PRSFFAAMLG DDSGSRTVSE PPPKPDNNND SGFTFPGPDR  60
QGGSENGDGN QRGLTVDQAT KKGEFGEQRM SSRADSLQNQ QVRSPYLTIP PGLSPTSLLD  120
SPVFLSNSLV QPSPTTGKFQ FAPNGNGKSS MMFLDSSNRN KDNFFEDPNN SSFAFKPFPD  180
HVNPPFMSTQ SFQTNEALVQ PEKQFPPQKI EVAQNETSSL HIRADFPRSS TEKKPEANFL  240
TPFESFNGNS ERNVQRLEDH DDDDADQRIS GDNANNAISA SSEDGYNWRK YGQKQVKGSE  300
YPRSYYKCTH PNCLVKKKVE RSHEGHITEI IYKGAHNHPK LAPNRRSGIG SSIALSDMQS  360
AINEQGGNGV DGGPSWGTNM QKGNGHWSQE SSNLEVTSSG LVMQGQNGQF ESSEAVDGSS  420
TFSNDEEEDD RATHGSVSLA YDGEGDESES KRRKVEAYAA DVSGATRAIR EPRVVVQTTS  480
EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSTGCTVRK HVERASHDLK SVITTYEGKH  540
NHDVPAARNS SHANNTMAAQ ALSIHPQVHM PEPSRIQNTM ARFDRPPFGL PGGPQLGPTP  600
THGYGFAMSQ QGPGGLAHMA MANHGKMPVL PVHHYLGQPR QMNEMGFVLP KGEPKVEPMS  660
DPGLNGAPMY HQMMNRLPLG PQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-147	WRKY family protein