PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966449.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 708aa MW: 77424.4 Da PI: 6.6828

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966449.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.6	2.3e-32	308	365	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers+ +++++ei+Y+g Hnh+k XP_024966449.1 308 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSH-EGHITEIIYKGAHNHPK 365 7**************************************.*************85 PP
2	WRKY	103.2	1.4e-32	510	568	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+ XP_024966449.1 510 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCTVRKHVERASHDLKSVITTYEGKHNHD 568 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MGGFDDHGGI IGDWMPPSSS PRSFFAAMLG DDSGSRTVSE PPPKPDNNND SGFTFPGPDR 60 QGGSENGDGN QRGLTVDQAT KKGEFGEQRM SSRAGLVERM AARAGHNAPR LNTDIIKPAD 120 SLQNQQVRSP YLTIPPGLSP TSLLDSPVFL SNSLVQPSPT TGKFQFAPNG NGKSSMMFLD 180 SSNRNKDNFF EDPNNSSFAF KPFPDHVNPP FMSTQSFQTN EALVQPEKQF PPQKIEVAQN 240 ETSSLHIRAD FPRSSTEKKP EANFLTPFES FNGNSERNVQ RLEDHDDDDA DQRISGDNAN 300 NAISASSEDG YNWRKYGQKQ VKGSEYPRSY YKCTHPNCLV KKKVERSHEG HITEIIYKGA 360 HNHPKLAPNR RSGIGSSIAL SDMQSAINEQ GGNGVDGGPS WGTNMQKGNG HWSQESSNLE 420 VTSSGLVMQG QNGQFESSEA VDGSSTFSND EEEDDRATHG SVSLAYDGEG DESESKRRKV 480 EAYAADVSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSTG 540 CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHANN TMAAQALSIH PQVHMPEPSR 600 IQNTMARFDR PPFGLPGGPQ LGPTPTHGYG FAMSQQGPGG LAHMAMANHG KMPVLPVHHY 660 LGQPRQMNEM GFVLPKGEPK VEPMSDPGLN GAPMYHQMMN RLPLGPQM

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MGGFDDHGGI IGDWMPPSSS PRSFFAAMLG DDSGSRTVSE PPPKPDNNND SGFTFPGPDR  60
QGGSENGDGN QRGLTVDQAT KKGEFGEQRM SSRAGLVERM AARAGHNAPR LNTDIIKPAD  120
SLQNQQVRSP YLTIPPGLSP TSLLDSPVFL SNSLVQPSPT TGKFQFAPNG NGKSSMMFLD  180
SSNRNKDNFF EDPNNSSFAF KPFPDHVNPP FMSTQSFQTN EALVQPEKQF PPQKIEVAQN  240
ETSSLHIRAD FPRSSTEKKP EANFLTPFES FNGNSERNVQ RLEDHDDDDA DQRISGDNAN  300
NAISASSEDG YNWRKYGQKQ VKGSEYPRSY YKCTHPNCLV KKKVERSHEG HITEIIYKGA  360
HNHPKLAPNR RSGIGSSIAL SDMQSAINEQ GGNGVDGGPS WGTNMQKGNG HWSQESSNLE  420
VTSSGLVMQG QNGQFESSEA VDGSSTFSND EEEDDRATHG SVSLAYDGEG DESESKRRKV  480
EAYAADVSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSTG  540
CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHANN TMAAQALSIH PQVHMPEPSR  600
IQNTMARFDR PPFGLPGGPQ LGPTPTHGYG FAMSQQGPGG LAHMAMANHG KMPVLPVHHY  660
LGQPRQMNEM GFVLPKGEPK VEPMSDPGLN GAPMYHQMMN RLPLGPQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-159	WRKY family protein