PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965307.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 569aa MW: 63091.2 Da PI: 5.1711

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.8	1.4e-18	325	409	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ e+ Li+a++e++ ++++g lk+ +Weev++ + + g+ ++++kqC++k+e+l+kry+ ++ +++ + + +f+ ++ XP_024965307.1 325 WTHPETANLIQAYQEKWYSVKKGPLKASQWEEVAITVaVRCGYdepTKTAKQCRHKIEKLRKRYRSERGKPRSK--AT--VWNFFKLMD 409 *********************************9975666654489***************9999984..44..5***998 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MATTTTSPPP SSPHEEVEND NLHQLISGSQ PPAASVTTPP SPIEEVDHRQ QFANSNSPYS 60 PPQTSVSHQP ENQVDRQQPP PEYVEDQREP PILPSPPLEE NVTEGRQTSS PPSLSLHSQP 120 PSPTSTGDEH PPENLNPNHE SPVSKQSLSP STPTTRPEDT VHIPNCSPNQ EHKSPSPSSP 180 PPRPEDPMES PNYGNNPSPN QDHPPPTQNS PPPGPQDPVE SPNYRNNHNP NPSQDHESPS 240 PSSPPRRSPS QSPSATTLQA SPKADESPKD PYSSPPPTAD SPSSPQDTLE PNTDLIPLPA 300 PPVGVPFLLH TVASSSPSKP QASPWTHPET ANLIQAYQEK WYSVKKGPLK ASQWEEVAIT 360 VAVRCGYDEP TKTAKQCRHK IEKLRKRYRS ERGKPRSKAT VWNFFKLMDN LQKGPLPISS 420 SQPMELVEYK NPSSSNGKKR KNDDNDDGGS ERVMRGLRTP VVHKHKGFYQ EDNGEEEEEE 480 EEVEEGSDDG EDEEGVAVQL AAEIKGFAER FVKMENKKIE MMRDTERYRM EMENKRMEMI 540 LESRKMLLEI VNKAFNSSSH KTQKKLSAS

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MATTTTSPPP SSPHEEVEND NLHQLISGSQ PPAASVTTPP SPIEEVDHRQ QFANSNSPYS  60
PPQTSVSHQP ENQVDRQQPP PEYVEDQREP PILPSPPLEE NVTEGRQTSS PPSLSLHSQP  120
PSPTSTGDEH PPENLNPNHE SPVSKQSLSP STPTTRPEDT VHIPNCSPNQ EHKSPSPSSP  180
PPRPEDPMES PNYGNNPSPN QDHPPPTQNS PPPGPQDPVE SPNYRNNHNP NPSQDHESPS  240
PSSPPRRSPS QSPSATTLQA SPKADESPKD PYSSPPPTAD SPSSPQDTLE PNTDLIPLPA  300
PPVGVPFLLH TVASSSPSKP QASPWTHPET ANLIQAYQEK WYSVKKGPLK ASQWEEVAIT  360
VAVRCGYDEP TKTAKQCRHK IEKLRKRYRS ERGKPRSKAT VWNFFKLMDN LQKGPLPISS  420
SQPMELVEYK NPSSSNGKKR KNDDNDDGGS ERVMRGLRTP VVHKHKGFYQ EDNGEEEEEE  480
EEVEEGSDDG EDEEGVAVQL AAEIKGFAER FVKMENKKIE MMRDTERYRM EMENKRMEMI  540
LESRKMLLEI VNKAFNSSSH KTQKKLSAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	438	466	KKRKNDDNDDGGSERVMRGLRTPVVHKHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	4e-23	Trihelix family protein