PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964741.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 400aa    MW: 44764.5 Da    PI: 9.5471
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.56.5e-401453052131
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssase 72 
                     a kkdrhski T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt+eWLl ++k  i+el  +                        s ++ ++
  XP_024964741.1 145 ASKKDRHSKINTARGPRDRRMRLSIDVAKKFFKLQDMLGFDKASKTVEWLLMKSKSGIQELLPQklnlrssfmavsnsasstpncevlSGNTDNQ 239
                     78**************************************************************9999999999877553333333332222234 PP

             TCP  73 c...eaesssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                     c                 +                 k++k+++ +  +++ +  ++ lake+r++ararar+rt ek +
  XP_024964741.1 240 CmvtG-------------DdqatpkfqekssyssncKEKKKSTGRGVRKSAHLLHSPLAKETRERARARARKRTVEKSN 305
                     44331.............022223333334556665333333333333333334589999***************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    
MYPSTNSDGN ISFTSINVQP MKISSLYNYD NDASLSKPPR EHYYPPSSSS FQLLSPHYIT  60
LEDETIFSDL LQXGNPFSHD HNHHDTNIVV HEQYSTHGIR ASLQSAIGRC SNNNGKFVAK  120
DGDGDINDGF DIQVGPKSSS TRRRASKKDR HSKINTARGP RDRRMRLSID VAKKFFKLQD  180
MLGFDKASKT VEWLLMKSKS GIQELLPQKL NLRSSFMAVS NSASSTPNCE VLSGNTDNQC  240
MVTGDDQATP KFQEKSSYSS NCKEKKKSTG RGVRKSAHLL HSPLAKETRE RARARARKRT  300
VEKSNKIGSG GDDQSSKSRP CLDQVIDQYL HLIGPSPIDQ PEQQISHLQF KQGISVDNSS  360
LMTANWSPSF LFNNQHAGAP PHEHQFNDFQ IFGNLWEGNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289299RERARARARKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-22TCP family protein