PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964579.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 315aa    MW: 34993.7 Da    PI: 7.0831
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601331.2e-4117114198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca Ck+lr kC+++C +apyfp +qp+kfanvhk+FGasnv+k+l++l++++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l+
  XP_024964579.1  17 PCAXCKLLRXKCTQECXFAPYFPPDQPQKFANVHKVFGASNVTKILNELNTTQREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLH 111
                     7********************************************************************************************99 PP

          DUF260  96 llk 98 
                      +k
  XP_024964579.1 112 NAK 114
                     887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MYAVLKVKEK MSSSNSPCAX CKLLRXKCTQ ECXFAPYFPP DQPQKFANVH KVFGASNVTK  60
ILNELNTTQR EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKQVQSDL HNAKLELANY  120
IGPSAMLPIL NPGFIPQIPN MPSSSVPVLP YNMQPMMGMP GPGNFRDSQH HPQILEAQQQ  180
QQQLVAVANS REQQDMLRNY EQQQQQQQPP QQQQSSADLV RFNGGFDAPG GSGQVTGGGF  240
CPMTAQAAMS PSLALGSSYV NNMYQIQQQQ PQQEQNHHLH HHLQPHQJLL PQESQQPPPA  300
QRAASEEDRN VAPSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-79LBD family protein