PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964347.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ERF

Protein Properties

Length: 269aa MW: 30275.6 Da PI: 6.2588

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.9	3e-14	101	150	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++ Vr ++ +grWvAeI+d + +r +lg+++t eeA + +++ + kl+g XP_024964347.1 101 KFQVVRKRR-WGRWVAEIMDlA-----TrQRLWLGTYDTSEEATRVYDNVAIKLRG 150 788999777.********54.....34***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MEVPAMSEKF SDQEELPFPK LIRVSMIDPY ATDSSGDEDD DHFGRWRVKK YANEINIELS 60 GKATMMPLNG NMTTARNSPS AVESKQKAMK KKKTLEGNVR KFQVVRKRRW GRWVAEIMDL 120 ATRQRLWLGT YDTSEEATRV YDNVAIKLRG GPGAITCFVM PTVLENPPPT NVTSMSDHHP 180 NRKSLKLPLA DAPPXXYQSF DSIQLGDEVA SFNMHHDFGS INPNQFDDFG ITPIGHNFIP 240 ESGRGSPSTL KINNYFEDIS DSTLDSSFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	109	KKKKTLEGNVRKFQVVRKRR
2	91	110	KKKKTLEGNVRKFQVVRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	2e-30	ERF family protein