PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024964184.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family Trihelix
Protein Properties Length: 268aa    MW: 30821.2 Da    PI: 9.664
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024964184.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.1e-1719102273
        trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                     Wt +e+++Liea++ +e+r +  +              + +W+++ ++++++g+ rs++qC++kw+nl +++kk++e e++r s
  XP_024964184.1  19 WTVEETMVLIEAKKLDEQRRSMVRgtpstttkptgaGGELRWKWIEEYCWKKGCFRSQNQCNDKWDNLMRDFKKVREFERRRMS 102
                     **************8888877432234455555655999*****************************************9854 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MEVQKGNAVM LRDYRKGNWT VEETMVLIEA KKLDEQRRSM VRGTPSTTTK PTGAGGELRW  60
KWIEEYCWKK GCFRSQNQCN DKWDNLMRDF KKVREFERRR MSVKDNNSDG VGGDGSYWKM  120
EKMERKNHNL PSNLLPQIYE ALAHVVEAKL GISVLPTSVV FRPCTSTTTS PPPLPPPPPP  180
PPPPPPPPPP PPPRRRSSEE GSGLMEAIKG YEEREETRHK ELYIMHQKRY KIEESKIEME  240
RQGFNGLVDA INNLSHSILA FTSQRTPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.17e-54Trihelix family protein