PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024963617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24477.3 Da PI: 9.8798 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.5 | 2e-19 | 15 | 57 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 krien+ r+vt+skRrngi+KKA+ L +LC +++a+i+fs + XP_024963617.1 15 KRIENDKERTVTLSKRRNGIFKKANALATLCRIQIAIILFSIS 57 79**************************************966 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MARLPSKGRK KIQLKRIEND KERTVTLSKR RNGIFKKANA LATLCRIQIA IILFSISEKP 60 LSFGSPNVQS VVNKFLNPNQ VDQQPNDFID MAVNSNHEPK LQDFNKEFDE VNERLANEKK 120 QEQMFDEYIK RLLGGKTYED YVVIRGYYGF MQIKFKMEEL QGNKEYTLDA VCRPSSSNDE 180 NEADLSKIGV PKRLLEVVIV RKKNYLLIPM L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 2e-23 | M-type_MADS family protein |