PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963517.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 561aa MW: 61899.7 Da PI: 9.3969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_024963517.1 50 FICEVCNKGFQREQNLQLHRRGH 72 89*******************88 PP
2	zf-C2H2	13.9	0.00016	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ XP_024963517.1 126 YKCEKCSKKYAVQSDWKAHSKTC 148 9******************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MFLLCLHLLQ PFNQLQPNRR RREAFQELQA NPDAEVIALS PKTLMATNRF ICEVCNKGFQ 60 REQNLQLHRR GHNLPWKLKQ KSNKEVKRKV YLCPEPSCVH HDPSRALGDL TGIKKHYSRK 120 HGEKKYKCEK CSKKYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE 180 SARHPSALGT IGSHLFGGHL SNSMNLGLSQ VGSQISQLHD QNHQSSTTNL LSLGSANFEQ 240 VMLPPSQTTL FSQTQQQQMP NSSSPFFISN SNQGLNHVFD YEQQRQQHGL MANKPNIHGL 300 MQLPDLHSNT TKISPNLFNL GFFSGSSNPT NGLKNSENNS QNNDTNMSST GFMIPDHQFN 360 NGGGSHDRVF LNSNNPHQEN QMPPHMSATA LLQKAAQMGS TTSNNNATTL LKSFGSSSKS 420 GVGGGDGKSH TGRQTLSSNF DARGDQALQS EMESDNQLQG LMNSLSSGGA SSMFGGYGGN 480 QNRNMNFGNM NEAGKFNPQN FSLSVGNSNR TTLDFLGVGY SQVEQQQQRP AHINVGSLDP 540 EMDSSTQATH MRGGSSKLQG N

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MFLLCLHLLQ PFNQLQPNRR RREAFQELQA NPDAEVIALS PKTLMATNRF ICEVCNKGFQ  60
REQNLQLHRR GHNLPWKLKQ KSNKEVKRKV YLCPEPSCVH HDPSRALGDL TGIKKHYSRK  120
HGEKKYKCEK CSKKYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE  180
SARHPSALGT IGSHLFGGHL SNSMNLGLSQ VGSQISQLHD QNHQSSTTNL LSLGSANFEQ  240
VMLPPSQTTL FSQTQQQQMP NSSSPFFISN SNQGLNHVFD YEQQRQQHGL MANKPNIHGL  300
MQLPDLHSNT TKISPNLFNL GFFSGSSNPT NGLKNSENNS QNNDTNMSST GFMIPDHQFN  360
NGGGSHDRVF LNSNNPHQEN QMPPHMSATA LLQKAAQMGS TTSNNNATTL LKSFGSSSKS  420
GVGGGDGKSH TGRQTLSSNF DARGDQALQS EMESDNQLQG LMNSLSSGGA SSMFGGYGGN  480
QNRNMNFGNM NEAGKFNPQN FSLSVGNSNR TTLDFLGVGY SQVEQQQQRP AHINVGSLDP  540
EMDSSTQATH MRGGSSKLQG N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-99	C2H2 family protein