PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963427.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 456aa MW: 51185.4 Da PI: 4.0087

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	81.3	1.1e-25	42	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k ++ Wtp+LH++F++a+e+L G + A+P +i +lmkv+gLt++hv+SHLQkYR XP_024963427.1 42 KSKVIWTPDLHNKFLKAIEKL-GVDSAVPTKIIDLMKVDGLTRDHVASHLQKYRA 95 57899**************.******************************5 PP
2	Myb_DNA-binding	34	6.8e-11	47	94	4	48
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT++++ ++++a+++lG + +++I m g+t+ ++ s++qky+ XP_024963427.1 47 WTPDLHNKFLKAIEKLGVDsaVPTKIIDLMKvDGLTRDHVASHLQKYR 94 ***********************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MSSNDEEGEI LKGSEDDKEL LLMKKNRSKS KSMRSRRAIT KKSKVIWTPD LHNKFLKAIE 60 KLGVDSAVPT KIIDLMKVDG LTRDHVASHL QKYRALSKKI AEANYWEQIA SQPVLLDSST 120 CNNGVRPTAV QKNWPSYSEI NPPILDTSSF SFPILEASSS TTANPSQLAN SPSLPNQGSS 180 MQETTILKQT MPDSLDGQGY LIDDELGIGN SVNSSNSGFM HGNIYDYGGS SIDVIHPYED 240 IEMVSSGDDL NSYMELPMNC PTNTGSSSYI QISNGFENNY SSQNKLVEMC PLSDSNLNKE 300 LLSSWNDEME MNTTNLEIGI AEDDLLLDEA ELATVWETFI PEQPYVDHHG EFGSTSNNPN 360 PPAFLETPNQ DVNGENFPNF FDSNYNEYHF TEQQLTNEET AAIDMQQYLD EYLPGFDPTF 420 DMYNIDEQLL MLESRPEPVE DDITLQDQFW NPFGQD

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MSSNDEEGEI LKGSEDDKEL LLMKKNRSKS KSMRSRRAIT KKSKVIWTPD LHNKFLKAIE  60
KLGVDSAVPT KIIDLMKVDG LTRDHVASHL QKYRALSKKI AEANYWEQIA SQPVLLDSST  120
CNNGVRPTAV QKNWPSYSEI NPPILDTSSF SFPILEASSS TTANPSQLAN SPSLPNQGSS  180
MQETTILKQT MPDSLDGQGY LIDDELGIGN SVNSSNSGFM HGNIYDYGGS SIDVIHPYED  240
IEMVSSGDDL NSYMELPMNC PTNTGSSSYI QISNGFENNY SSQNKLVEMC PLSDSNLNKE  300
LLSSWNDEME MNTTNLEIGI AEDDLLLDEA ELATVWETFI PEQPYVDHHG EFGSTSNNPN  360
PPAFLETPNQ DVNGENFPNF FDSNYNEYHF TEQQLTNEET AAIDMQQYLD EYLPGFDPTF  420
DMYNIDEQLL MLESRPEPVE DDITLQDQFW NPFGQD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	30	KKNRSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58080.1	8e-21	ARR-B family protein