PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963416.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 809aa MW: 90437.4 Da PI: 8.5945

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	8.9e-08	186	206	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C++f++ G C++G +C+F H XP_024963416.1 186 RPCKDFSA-GNCRRGIQCRFLH 206 79****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence
MSGRRRRSES LWDRKEEEAT RTEISEKVPY SSFIGDGSPK RSNSEANDAG DISGQPSREP 60 MQGNQNISMD NDNSSGRHGM KMDPAFDEWE NQYSSRPSDN SYDLPFRSGE RGVGGTGNMS 120 KDRDRSRSPH RSRGRDRDRD RDRGSTRGLA RSRSRSRSRS RGRGRSPFSD ERRESYESGD 180 SRVSSRPCKD FSAGNCRRGI QCRFLHQELV DSRGGDLMEK YSGGLRFRDD KNSVSKGSDG 240 YRKDTGRKSG VDHTTSSGDD YHKGNRNAYD DQDHRRQSNQ TTRAPCRFFI MGKCNRTNCK 300 FSHDVPKSGG HEGRSHDNSR PWNDRQPQDQ VSASGFSDFP KSSHDFDDKN KSWSGPLWND 360 LESGGFDEMS RDNILDDKNR TWDPPGWNGS EKNSDILSQP RSVTNHMDMN QESQIIHDSS 420 QLHSQHVMPE TSGSQLTNAT TTVIPEVPRI PCFQQHQKQG EGSVSMMIDS RNMVSGQTNK 480 QIHSYGSDFV PSVHNMAFQY PSTLNGTEKS SDMLSLSSLN GPKLQSNGSV QGMFLHVDLQ 540 KQTDIQNKRG GKPLETSKND IPQLDATVAS NEQVSQVSSL PVSLPQISQN LNLANALELL 600 YSLPNTASSG APVDSMVVQQ NLDTKSKEHY ESSRDMVVNE SNISVPMGIL SNSMEQGNQV 660 SVEQVSSIDP NPSKLVAVGM PDGKQEPVGI LQVNENRKAD KNENTNPGKS EAQGKVEEGN 720 ISNDEKAMRQ FKIALVEFVK EILKPTWKEG KMSREVYKTI VKKVVDKVTS TIQGNQIPRT 780 QEKIDQYLTF SKSKITKLVE AYVGRFLKA

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence

MSGRRRRSES LWDRKEEEAT RTEISEKVPY SSFIGDGSPK RSNSEANDAG DISGQPSREP  60
MQGNQNISMD NDNSSGRHGM KMDPAFDEWE NQYSSRPSDN SYDLPFRSGE RGVGGTGNMS  120
KDRDRSRSPH RSRGRDRDRD RDRGSTRGLA RSRSRSRSRS RGRGRSPFSD ERRESYESGD  180
SRVSSRPCKD FSAGNCRRGI QCRFLHQELV DSRGGDLMEK YSGGLRFRDD KNSVSKGSDG  240
YRKDTGRKSG VDHTTSSGDD YHKGNRNAYD DQDHRRQSNQ TTRAPCRFFI MGKCNRTNCK  300
FSHDVPKSGG HEGRSHDNSR PWNDRQPQDQ VSASGFSDFP KSSHDFDDKN KSWSGPLWND  360
LESGGFDEMS RDNILDDKNR TWDPPGWNGS EKNSDILSQP RSVTNHMDMN QESQIIHDSS  420
QLHSQHVMPE TSGSQLTNAT TTVIPEVPRI PCFQQHQKQG EGSVSMMIDS RNMVSGQTNK  480
QIHSYGSDFV PSVHNMAFQY PSTLNGTEKS SDMLSLSSLN GPKLQSNGSV QGMFLHVDLQ  540
KQTDIQNKRG GKPLETSKND IPQLDATVAS NEQVSQVSSL PVSLPQISQN LNLANALELL  600
YSLPNTASSG APVDSMVVQQ NLDTKSKEHY ESSRDMVVNE SNISVPMGIL SNSMEQGNQV  660
SVEQVSSIDP NPSKLVAVGM PDGKQEPVGI LQVNENRKAD KNENTNPGKS EAQGKVEEGN  720
ISNDEKAMRQ FKIALVEFVK EILKPTWKEG KMSREVYKTI VKKVVDKVTS TIQGNQIPRT  780
QEKIDQYLTF SKSKITKLVE AYVGRFLKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	141	RSRGRDRDRDR
2	133	143	RSRGRDRDRDR
3	151	161	RSRGRDRDRDR
4	151	159	RSRSRSRSR
5	153	163	RSRGRDRDRDR
6	153	161	RSRSRSRSR
7	155	165	RSRGRDRDRDR
8	155	163	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-14	C3H family protein