PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024962965.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 360aa    MW: 40225.7 Da    PI: 6.977
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024962965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.12.4e-18252286135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR+gp g+ktLCnaCG++y++ +l
  XP_024962965.1 252 CLHCATDKTPQWRSGPMGPKTLCNACGVRYKSGRL 286
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MENPEIFQAS SANATHHHHH HHHLHHQFTP EKSKTDHFLI EDLLDFPTDE MGPAVDPTPY  60
VGENVVPGGG STDSSTLIDS CNSSLCGGVD HNFPADFGRR SFSDTQFSND LCVPYDDLAE  120
LEWLSNVVEE SFSCEDLQKL QLISGIKARP NYASNNQEFQ AEAANRANNA IFNSDMSVPG  180
KARTKRSRAA PCNWTSRLLV VSPTATGPTV TMSSESESDI ASSSIGKKTV KAPPKKKEVY  240
DNPSHNGDGR KCLHCATDKT PQWRSGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL  300
TKHSNSHRKV LELRRQKEMQ KAQQQQQQQY LHHQHMMFDV PNNDDYLIHQ HIGPDYRQLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-82GATA family protein