PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024962827.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 417aa    MW: 47394.7 Da    PI: 5.1549
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024962827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.12e-94404163374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+  +d +++++lL+ l+el+sp+gd  q+la+yf++AL  + ++s++++yk+l + +++++  +++ +    f+evsP+ +f+h++
  XP_024962827.1  40 RLLRECARAIYVKDSAKINHLLWMLNELSSPYGDCDQKLASYFLQALFCKATESGPRCYKTLVSVADKSHCFDSARKLILKFQEVSPWTTFGHVA 134
                     6899**********************************************************9999985554444445455************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrledle 190
                      N aIlea++ge+++HiiD++ + ++QWp+Ll+aLa+R++++psl++T+v+  +s  +  ++e+ +r++kfA+ +gvpfefnv+    + l +l+
  XP_024962827.1 135 SNGAILEAFDGETKLHIIDISNTLCTQWPTLLEALATRSDETPSLKLTVVVT-ASLVRSVMKEITQRMEKFARLMGVPFEFNVItgSNRLLGQLT 228
                     ****************************************************.556999************************9543446899** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseeri 283
                      eeL v+++Ea+aVn++ +l r+      +e+ r++v++l+ sl+P+vv++ve+ead   ++++F++ f e+l+yy+  f++le+++ ++s+er 
  XP_024962827.1 229 KEELGVHEDEAIAVNCIGALRRVE-----VEE-REDVIRLFSSLKPRVVTIVEEEADFasSRSDFAKCFEECLRYYTLYFEMLEESFTPTSNERL 317
                     **********************97.....444.889*******************999656779******************************* PP

            GRAS 284 kvErellgreivnvvacegaerr.....erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve......eesgslvlgWkdrpL 367
                     ++Ere  +r+iv v++c  ++ +     er+e+ ++W +rl+e  F+pv +s+++++++k+llr++   g+++       + +  ++l Wk++p+
  XP_024962827.1 318 MLERE-CSRSIVRVLSCDDTQNIgsgdcERREKGNQWCQRLKEQ-FSPVGFSDDVVDDVKALLRRYR-AGWSLAldqigsNTDSGIYLAWKEEPV 409
                     *****.89*********987753333339************985.**********************.6666664366644477888******** PP

            GRAS 368 vsvSaWr 374
                     v++SaW+
  XP_024962827.1 410 VWASAWK 416
                     ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MERTHHSPYT NHQTTSTPQS NHTYSDSGEG CEVEDKWAPR LLRECARAIY VKDSAKINHL  60
LWMLNELSSP YGDCDQKLAS YFLQALFCKA TESGPRCYKT LVSVADKSHC FDSARKLILK  120
FQEVSPWTTF GHVASNGAIL EAFDGETKLH IIDISNTLCT QWPTLLEALA TRSDETPSLK  180
LTVVVTASLV RSVMKEITQR MEKFARLMGV PFEFNVITGS NRLLGQLTKE ELGVHEDEAI  240
AVNCIGALRR VEVEEREDVI RLFSSLKPRV VTIVEEEADF ASSRSDFAKC FEECLRYYTL  300
YFEMLEESFT PTSNERLMLE RECSRSIVRV LSCDDTQNIG SGDCERREKG NQWCQRLKEQ  360
FSPVGFSDDV VDDVKALLRR YRAGWSLALD QIGSNTDSGI YLAWKEEPVV WASAWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-139GRAS family protein