PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962096.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 317aa MW: 36146.7 Da PI: 9.0138

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.2	9.1e-18	61	150	2	86
trihelix 2 WtkqevlaLiearr.emeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt +e+l+Li+a++ ++e+r++++ + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e + +++ p + +++ XP_024962096.1 61 WTLEETLVLITAKKlDDERRINATTsatlnirGGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVREYEVRSPAQD---RPSYWSMD 150 **********994444555544245555558899*************************************9963333...36666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MSEPPNTSTI TPPNIVNVTP YPAISYKNHH LPAIIHGGAT TSTVTLSPAS NHLREYRKGN 60 WTLEETLVLI TAKKLDDERR INATTSATLN IRGGELRWKW VENYCWSHGC LRSQNQCNDK 120 WDNLLRDYKK VREYEVRSPA QDRPSYWSMD KTQRKERNLP SNLLLNIYEA LNDVVHRKIP 180 HRQQQPLPPA LPPPPPPPPP AAVTTHPPPP ASEASAESSE TEGEETEKVD SETKRRRVRD 240 IGSSIVDSTT LLSQTLKSYE EKKEKRHREL MELEEQRLRL EETRNEMNRQ GIVGLVASIN 300 KLSDAIHSLI SEKRGKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	238	KRRRV
2	234	265	KRRRVRDIGSSIVDSTTLLSQTLKSYEEKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-48	Trihelix family protein