PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024961982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24884.5 Da PI: 8.7421 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.1 | 5.6e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCda+va+iifs++gkl e++s XP_024961982.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVALIIFSPRGKLCEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 75.1 | 1.9e-25 | 79 | 172 | 4 | 97 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++s e+a++++l++e a + k+ie L+ +R+l Ge+L+s ++ eLqq+eqqLe+s+ iR++K++++ eq+eelq kek l ++n +L+ k XP_024961982.1 79 ENSSSIEDAQWQHLKNETASMAKKIEALELAKRKLSGEGLGSSTIDELQQIEQQLERSVCIIRARKMQVYNEQJEELQAKEKILASQNAMLNVK 172 4455599***********************************************************************************9866 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVALIIFSP RGKLCEFASS 60 SMEETIQRYT NHVKDIQTEN SSSIEDAQWQ HLKNETASMA KKIEALELAK RKLSGEGLGS 120 STIDELQQIE QQLERSVCII RARKMQVYNE QJEELQAKEK ILASQNAMLN VKCVVRPQEK 180 MEEGRASLQM TECGESSDVE TELFIGLPEK RTRFNKPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-69 | MIKC_MADS family protein |