PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961125.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 351aa MW: 38590.7 Da PI: 9.9207

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.3	2.7e-15	42	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v+k++ + + ++++qCk+k+e+++kry+ + ++ s++p++ +l+ XP_024961125.1 42 EWSEGAVSSLLEAYEAKWVLRNRAKLKGHDWEDVAKHVssraNSSKSPKTQTQCKNKIESMKKRYRSESATTDV------SSWPLYPRLD 125 5***********************************87777777888999************99888774......5799999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MDKPNKQENP SLLTNRDHDS PPKKPPPATV AGGGGDRLKR DEWSEGAVSS LLEAYEAKWV 60 LRNRAKLKGH DWEDVAKHVS SRANSSKSPK TQTQCKNKIE SMKKRYRSES ATTDVSSWPL 120 YPRLDLLLRG SAGPPLVTVA ASAGDLPCSS IPIASSNLPL MVFEHTPPPP PPPLPSTLIH 180 SSSTPVTAAA PAPGSNPVIQ GTGQNSIDSN GVDRENKEDV EGTKIPDHQL SEKMEIETDC 240 STPALYSNKE KIQSKNHKTR MTDGRKRRRK SENWDVAESI RWLAKVMVRS EQAKAETMRE 300 LEKMRADAEV KRGEIDLKRT EIIAHTQLEI ARLLAASLGK GVDPSLRIGR S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MDKPNKQENP SLLTNRDHDS PPKKPPPATV AGGGGDRLKR DEWSEGAVSS LLEAYEAKWV  60
LRNRAKLKGH DWEDVAKHVS SRANSSKSPK TQTQCKNKIE SMKKRYRSES ATTDVSSWPL  120
YPRLDLLLRG SAGPPLVTVA ASAGDLPCSS IPIASSNLPL MVFEHTPPPP PPPLPSTLIH  180
SSSTPVTAAA PAPGSNPVIQ GTGQNSIDSN GVDRENKEDV EGTKIPDHQL SEKMEIETDC  240
STPALYSNKE KIQSKNHKTR MTDGRKRRRK SENWDVAESI RWLAKVMVRS EQAKAETMRE  300
LEKMRADAEV KRGEIDLKRT EIIAHTQLEI ARLLAASLGK GVDPSLRIGR S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	269	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	6e-98	Trihelix family protein