PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961005.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 342aa MW: 38088.8 Da PI: 8.1824

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.8	2.8e-55	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel++ yL +k+++++++ ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ XP_024961005.1 12 LPPGFRFHPTDEELITSYLINKISDSSFTG-RAITDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNG 105 79***********************999.89***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfy+grap+gekt+Wvmheyr+ XP_024961005.1 106 vTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRV 139 88999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MEGEVNKEAE TLPPGFRFHP TDEELITSYL INKISDSSFT GRAITDVDLN KCEPWDLPGK 60 AKMGEKEWYF FSLRDRKYPT GVRTNRATNT GYWKTTGKDK EIFNGVTSEL VGMKKTLVFY 120 RGRAPRGEKT NWVMHEYRVH AKSAFRTSKD EWVVCRVFQK TAGGKKYPSS SSSHSRGMIN 180 PYNLDIGPAS GIHMPPSDPT ASYQFPVGLG RTYMNNADLS EFSRVFRGNT NMPLHQTQMN 240 YPNGGGAECF TISGLNLNLR GSTSAPMRPM GGAQPPLPLP PYPQEDVTSS MLINSCGLGN 300 EQSMGYGGDM SSNANNNRFM TMEQCADLDN YWAPYGLPIN EG

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MEGEVNKEAE TLPPGFRFHP TDEELITSYL INKISDSSFT GRAITDVDLN KCEPWDLPGK  60
AKMGEKEWYF FSLRDRKYPT GVRTNRATNT GYWKTTGKDK EIFNGVTSEL VGMKKTLVFY  120
RGRAPRGEKT NWVMHEYRVH AKSAFRTSKD EWVVCRVFQK TAGGKKYPSS SSSHSRGMIN  180
PYNLDIGPAS GIHMPPSDPT ASYQFPVGLG RTYMNNADLS EFSRVFRGNT NMPLHQTQMN  240
YPNGGGAECF TISGLNLNLR GSTSAPMRPM GGAQPPLPLP PYPQEDVTSS MLINSCGLGN  300
EQSMGYGGDM SSNANNNRFM TMEQCADLDN YWAPYGLPIN EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-110	NAC family protein