PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960641.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 374aa MW: 43371.2 Da PI: 8.3801

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8e-07	66	87	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +L++H+++H XP_024960641.1 66 VCEECGASFRKPAYLRQHMQSH 87 7*******************99 PP
2	zf-C2H2	17.7	1e-05	93	117	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC+ s++rk++L+rH+ H XP_024960641.1 93 FTCSvdDCNSSYRRKDHLTRHLLQH 117 89*******************9887 PP
3	zf-C2H2	11.3	0.001	122	147	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp +C+ Fs + n+ rH + H XP_024960641.1 122 FVCPveNCNSKFSIQGNMSRHVKEiH 147 89********************9988 PP
4	zf-C2H2	19.2	3.2e-06	163	187	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C Cgk+F+ +s L++H +H XP_024960641.1 163 YPCLepGCGKVFKYPSKLRKHEDSH 187 788888***************9888 PP
5	zf-C2H2	16.6	2.2e-05	254	278	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C+ +Fs+ snL++H ++ H XP_024960641.1 254 KCSfdGCDLTFSTGSNLRQHVKSaH 278 799999****************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MGEERIETQR DFPIFRDIRR YTCEYCGIVR SKKTIISAHI QSHHQDEIKE KEGDGEVEKK 60 GKKMIVCEEC GASFRKPAYL RQHMQSHSLE RPFTCSVDDC NSSYRRKDHL TRHLLQHQGK 120 LFVCPVENCN SKFSIQGNMS RHVKEIHDDS GSISDDVKDP KQYPCLEPGC GKVFKYPSKL 180 RKHEDSHVRL ETIEAFCAEP GCMKYFTNEQ CLKAHLQSCH QHINCEICGS KQLRKNIKRH 240 LRTHEEVVSD QRIKCSFDGC DLTFSTGSNL RQHVKSAHFQ QKPFVCSIPG CEMRFSFKHV 300 RDKHEKSGLH VYTLGDFVEA DEQFQSRPRG GRKRKLPAMI ESLMRKRVLP PTESENVQQG 360 HDYVSRLFSP GDED

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MGEERIETQR DFPIFRDIRR YTCEYCGIVR SKKTIISAHI QSHHQDEIKE KEGDGEVEKK  60
GKKMIVCEEC GASFRKPAYL RQHMQSHSLE RPFTCSVDDC NSSYRRKDHL TRHLLQHQGK  120
LFVCPVENCN SKFSIQGNMS RHVKEIHDDS GSISDDVKDP KQYPCLEPGC GKVFKYPSKL  180
RKHEDSHVRL ETIEAFCAEP GCMKYFTNEQ CLKAHLQSCH QHINCEICGS KQLRKNIKRH  240
LRTHEEVVSD QRIKCSFDGC DLTFSTGSNL RQHVKSAHFQ QKPFVCSIPG CEMRFSFKHV  300
RDKHEKSGLH VYTLGDFVEA DEQFQSRPRG GRKRKLPAMI ESLMRKRVLP PTESENVQQG  360
HDYVSRLFSP GDED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	335	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-147	C2H2 family protein