PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960402.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 645aa MW: 72434.3 Da PI: 8.683

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.1	1.9e-10	412	456	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e +e L +F+kn ps++ +e+L+k+lgL+ ++V WF+N R+ XP_024960402.1 412 SEAVEKLRLVFAKNELPSRAVKEDLSKQLGLDLEKVNKWFKNARY 456 678999*************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MTGAETKEAP ENIGKLVHLQ SSTPKSYAKR SRKLKPHGNT LSSPMSKKKL VDLLTNSKKK 60 EFKRRNASNK ASKSLSKPSL VSCQNQKKQL AATGSNENEK CEKGDPTSEK FKQRRKRKRT 120 NNKVEVDEAS RLQRRTRYLL IKMKIEQNLL DAYSTEGWKG QSREKIKPEK ELQRAKKQIL 180 KCKLGIRDAL RQLDLLSSDG CIDESVIAPD GSVHHEHEIF KVEATLPDGG NTLLNQEEWP 240 SDDSGDDDYD PDRVEKRDSS CSRVCSEGES CDDDASSSYS LQSLDVKALD DESQKLDMGL 300 ESISADLIGA VSGSGSDCEF VSGRRQRQAV DYRKLYDEMF GKDALANEQA SEDEDWGPTN 360 RKRREKESDA ASTLMTLCET EEKSVKDVPD TSKVDTNLSC KETKRSFFRI PSEAVEKLRL 420 VFAKNELPSR AVKEDLSKQL GLDLEKVNKW FKNARYLSLK TKRAGEENPT QNDGISISKE 480 SGSEPAKNEA IDEILSEDMP TTLAHTPGNG HMKKFRRRKN PQSPTSTAKQ QQVEREFNLT 540 TSTNKVDGNE DLGDDDLSLK MLRENVKKEK IRAVDIGGSS EGDDQQAVAA AESQMEKLCF 600 LKTKMEKLKQ VLLLRTPNRR AKTTATSIDH TNTIFVPVAH LKEKH

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MTGAETKEAP ENIGKLVHLQ SSTPKSYAKR SRKLKPHGNT LSSPMSKKKL VDLLTNSKKK  60
EFKRRNASNK ASKSLSKPSL VSCQNQKKQL AATGSNENEK CEKGDPTSEK FKQRRKRKRT  120
NNKVEVDEAS RLQRRTRYLL IKMKIEQNLL DAYSTEGWKG QSREKIKPEK ELQRAKKQIL  180
KCKLGIRDAL RQLDLLSSDG CIDESVIAPD GSVHHEHEIF KVEATLPDGG NTLLNQEEWP  240
SDDSGDDDYD PDRVEKRDSS CSRVCSEGES CDDDASSSYS LQSLDVKALD DESQKLDMGL  300
ESISADLIGA VSGSGSDCEF VSGRRQRQAV DYRKLYDEMF GKDALANEQA SEDEDWGPTN  360
RKRREKESDA ASTLMTLCET EEKSVKDVPD TSKVDTNLSC KETKRSFFRI PSEAVEKLRL  420
VFAKNELPSR AVKEDLSKQL GLDLEKVNKW FKNARYLSLK TKRAGEENPT QNDGISISKE  480
SGSEPAKNEA IDEILSEDMP TTLAHTPGNG HMKKFRRRKN PQSPTSTAKQ QQVEREFNLT  540
TSTNKVDGNE DLGDDDLSLK MLRENVKKEK IRAVDIGGSS EGDDQQAVAA AESQMEKLCF  600
LKTKMEKLKQ VLLLRTPNRR AKTTATSIDH TNTIFVPVAH LKEKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	63	KRSRKLKPHGNTLSSPMSKKKLVDLLTNSKKKEFK
2	114	119	RRKRKR
3	114	144	RRKRKRTNNKVEVDEASRLQRRTRYLLIKMK
4	115	145	RRKRKRTNNKVEVDEASRLQRRTRYLLIKMK
5	116	146	RRKRKRTNNKVEVDEASRLQRRTRYLLIKMK
6	361	366	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	9e-45	HB-PHD family protein