PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960401.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-PHD

Protein Properties

Length: 724aa MW: 81364.6 Da PI: 7.8109

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.9	2.2e-10	491	535	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e +e L +F+kn ps++ +e+L+k+lgL+ ++V WF+N R+ XP_024960401.1 491 SEAVEKLRLVFAKNELPSRAVKEDLSKQLGLDLEKVNKWFKNARY 535 678999*************************************97 PP
2	PHD	29.8	1.4e-10	220	273	2	50
BTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 2 CkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 C+ C+ d+ +++++lCd +C+ +fH+ C++++l +e++p g w+C+ C + XP_024960401.1 220 CAKCKLRDAfpDNDIILCDgTCNCAFHQMCIDPPLLTENIPPGdqGWFCKYCIC 273 88899844445******56****************9999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MTGAETKEAP ENIGKLVHLQ SSTPKSYAKR SRKLKPHGNT LSSPMSKKKL VDLLTNSKKK 60 EFKRRNASNK ASKSLSKPSL VSCQNQKKQL AATGSNENEK CEKGDPTSEK FKQRRKRKRT 120 NNKVEVDEAS RLQRRTRYLL IKMKIEQNLL DAYSTEGWKG QSREKIKPEK ELQRAKKQIL 180 KCKLGIRDAL RQLDLLSSDG CIDESVIAPD GSVHHEHIHC AKCKLRDAFP DNDIILCDGT 240 CNCAFHQMCI DPPLLTENIP PGDQGWFCKY CICKTEIMEA MNAHLGTSYP HDSNWQEIFK 300 VEATLPDGGN TLLNQEEWPS DDSGDDDYDP DRVEKRDSSC SRVCSEGESC DDDASSSYSL 360 QSLDVKALDD ESQKLDMGLE SISADLIGAV SGSGSDCEFV SGRRQRQAVD YRKLYDEMFG 420 KDALANEQAS EDEDWGPTNR KRREKESDAA STLMTLCETE EKSVKDVPDT SKVDTNLSCK 480 ETKRSFFRIP SEAVEKLRLV FAKNELPSRA VKEDLSKQLG LDLEKVNKWF KNARYLSLKT 540 KRAGEENPTQ NDGISISKES GSEPAKNEAI DEILSEDMPT TLAHTPGNGH MKKFRRRKNP 600 QSPTSTAKQQ QVEREFNLTT STNKVDGNED LGDDDLSLKM LRENVKKEKI RAVDIGGSSE 660 GDDQQAVAAA ESQMEKLCFL KTKMEKLKQV LLLRTPNRRA KTTATSIDHT NTIFVPVAHL 720 KEKH

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MTGAETKEAP ENIGKLVHLQ SSTPKSYAKR SRKLKPHGNT LSSPMSKKKL VDLLTNSKKK  60
EFKRRNASNK ASKSLSKPSL VSCQNQKKQL AATGSNENEK CEKGDPTSEK FKQRRKRKRT  120
NNKVEVDEAS RLQRRTRYLL IKMKIEQNLL DAYSTEGWKG QSREKIKPEK ELQRAKKQIL  180
KCKLGIRDAL RQLDLLSSDG CIDESVIAPD GSVHHEHIHC AKCKLRDAFP DNDIILCDGT  240
CNCAFHQMCI DPPLLTENIP PGDQGWFCKY CICKTEIMEA MNAHLGTSYP HDSNWQEIFK  300
VEATLPDGGN TLLNQEEWPS DDSGDDDYDP DRVEKRDSSC SRVCSEGESC DDDASSSYSL  360
QSLDVKALDD ESQKLDMGLE SISADLIGAV SGSGSDCEFV SGRRQRQAVD YRKLYDEMFG  420
KDALANEQAS EDEDWGPTNR KRREKESDAA STLMTLCETE EKSVKDVPDT SKVDTNLSCK  480
ETKRSFFRIP SEAVEKLRLV FAKNELPSRA VKEDLSKQLG LDLEKVNKWF KNARYLSLKT  540
KRAGEENPTQ NDGISISKES GSEPAKNEAI DEILSEDMPT TLAHTPGNGH MKKFRRRKNP  600
QSPTSTAKQQ QVEREFNLTT STNKVDGNED LGDDDLSLKM LRENVKKEKI RAVDIGGSSE  660
GDDQQAVAAA ESQMEKLCFL KTKMEKLKQV LLLRTPNRRA KTTATSIDHT NTIFVPVAHL  720
KEKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	63	KRSRKLKPHGNTLSSPMSKKKLVDLLTNSKKKEFK
2	114	119	RRKRKR
3	114	144	RRKRKRTNNKVEVDEASRLQRRTRYLLIKMK
4	115	145	RRKRKRTNNKVEVDEASRLQRRTRYLLIKMK
5	116	146	RRKRKRTNNKVEVDEASRLQRRTRYLLIKMK
6	440	445	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-156	HB-PHD family protein