PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960322.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 349aa MW: 38105.2 Da PI: 8.1824

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.9	1.1e-35	76	156	3	83
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as++ + ss++ XP_024960322.1 76 VKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASAMgA-AGAASSHG 156 6999***********************************************************9999988852.22222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MDPKTSDHHH HHHHRPQQQP HQISSFLTLP QPTTTMADNP KSSSSSEIKD FQIVIADKED 60 PAGGGGGNKK QQQLSVKRSS NKDRHTKVEG RGRRIRMPAL CAARIFQLTR ELGHKSDGET 120 IQWLLQQAEP SIIAATGTGT IPASAMGAAG AASSHGVSIS AGLQHKIDES RTNWPLVGGN 180 LGVGRPTNHM ATPPGIWPAI PTTGFGFQSP SPSSGPSANN LGTESSNYLQ KIAFSGFDLP 240 GSNLGPMYFS SILGNHNHQQ QQQLPGLELG LSQDNHIGGL NQQALNQIYQ MGQARLHQQQ 300 QQQQQQQQSS KDDDSQGSEE WRVKGDFDED CFRASSVSKQ LYIYRCFWV

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MDPKTSDHHH HHHHRPQQQP HQISSFLTLP QPTTTMADNP KSSSSSEIKD FQIVIADKED  60
PAGGGGGNKK QQQLSVKRSS NKDRHTKVEG RGRRIRMPAL CAARIFQLTR ELGHKSDGET  120
IQWLLQQAEP SIIAATGTGT IPASAMGAAG AASSHGVSIS AGLQHKIDES RTNWPLVGGN  180
LGVGRPTNHM ATPPGIWPAI PTTGFGFQSP SPSSGPSANN LGTESSNYLQ KIAFSGFDLP  240
GSNLGPMYFS SILGNHNHQQ QQQLPGLELG LSQDNHIGGL NQQALNQIYQ MGQARLHQQQ  300
QQQQQQQQSS KDDDSQGSEE WRVKGDFDED CFRASSVSKQ LYIYRCFWV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-54	TCP family protein