PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960079.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 261aa MW: 29164.9 Da PI: 8.6719

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.1e-18	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ eEdell ++v ++G ++W++I++ ++ gR++k+c++rw + XP_024960079.1 12 KGPWSSEEDELLCKLVDRYGARNWTLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	51.3	2.6e-16	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T e+d+ +++a++++G++ W+tIar ++ gRt++ +k++w++ XP_024960079.1 66 PFTLEDDQVILQAHARFGNK-WATIARLLN-GRTDNAVKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MDSSRKHLDR IKGPWSSEED ELLCKLVDRY GARNWTLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRPFTLE DDQVILQAHA RFGNKWATIA RLLNGRTDNA VKNHWNSTLK RKCTAVDGGD 120 RGERNSQRPK MSDRDFNATV TSISGTGSLS GSDLCDSSGN NIPLVSVAEI CITSSEFQRK 180 VETEPPTALT LALPGTGSYL YDICDQKPAK KLNATPFGEE VHSMMQEMIR SEVRKYLASE 240 ENLMQVRNAG VKRIGVSKSD Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-68	MYB family protein