PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959857.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 285aa MW: 33621 Da PI: 6.9472

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.2	2.1e-18	57	143	1	85
trihelix 1 rWtkqevlaLiearr.emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ ++Li a++ me ++++ + ++W+++s +m erg+++sp+qC+ek+ +++k+yk++ ++ ++ +++++++ ++d++ XP_024959857.1 57 KWTDETARLLIIAVSyVMEAAVSELDDDSTRWKAISTAMIERGCNVSPQQCEEKFGEIKKKYKQMIDILGRAmSCNVVENPILLDSI 143 7****9999998845788899999******************************************99789999888888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MEGSSRSQGS MKPHYQYTYQ PLVQNQPLEG EPSSNKFTGS TLNNRSEPRN VHGNFSKWTD 60 ETARLLIIAV SYVMEAAVSE LDDDSTRWKA ISTAMIERGC NVSPQQCEEK FGEIKKKYKQ 120 MIDILGRAMS CNVVENPILL DSIEIPERQK EEVRRLMSSD QFLYREMCSL RSGNRLFLPH 180 DWELRRSVFF SLTGNHGEQH TDQEGIPNEC RVLKARWIRL EEKKLEMQQE RLQFEKERFD 240 WLRFNHNEEL KLEKMRLENE RLKLKNARLA LELKHRETAT HDENN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	2e-42	Trihelix family protein