PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959214.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 430aa MW: 47955.7 Da PI: 7.3952

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.4	1.4e-28	161	217	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dg+nWrKYGqK v+g+ f rsYY+Ct+a+Cp++k+vers+ d++++ei Y +H+h+k XP_024959214.1 161 DGFNWRKYGQKLVRGNVFVRSYYKCTFANCPARKQVERSH-DGHITEINYLCKHEHPK 217 9*************************************.*************85 PP
2	WRKY	104.9	4.2e-33	324	382	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++d+kvv++tYeg+H+h+ XP_024959214.1 324 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNAGCPVKKHVERASHDEKVVITTYEGRHDHD 382 58********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MVKSSGYLKL TDGLNGKNQV SVSNQERNFG SVMTKDSRDM HQRPYQGSEV HTSQSNQEGS 60 SLSVLPGKGS DSENRVSESN EQRTTHSIIP ERVPDTLEQT PSPDASVPES QSAQENFVVA 120 LRPEKGLDKL PLRRNPENAV NVLHSDQGVT FSRLPEKPNV DGFNWRKYGQ KLVRGNVFVR 180 SYYKCTFANC PARKQVERSH DGHITEINYL CKHEHPKPAH TLLKSPSCVH PNQARGSDEP 240 SLTSETSQDP EASATRPQFM VASSQNFAEV AVSRSSEIES EVKNILPDSK RQKKESVGVN 300 DSVVTKTNYE PRVIVQTTSA VDIVNDGYRW RKYGQKLVKG NPNPRSYYRC SNAGCPVKKH 360 VERASHDEKV VITTYEGRHD HDMPAGTRTV TQNTQGNNNE SDDDDDESTP QPESANESTG 420 YWRLKTCTGL

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MVKSSGYLKL TDGLNGKNQV SVSNQERNFG SVMTKDSRDM HQRPYQGSEV HTSQSNQEGS  60
SLSVLPGKGS DSENRVSESN EQRTTHSIIP ERVPDTLEQT PSPDASVPES QSAQENFVVA  120
LRPEKGLDKL PLRRNPENAV NVLHSDQGVT FSRLPEKPNV DGFNWRKYGQ KLVRGNVFVR  180
SYYKCTFANC PARKQVERSH DGHITEINYL CKHEHPKPAH TLLKSPSCVH PNQARGSDEP  240
SLTSETSQDP EASATRPQFM VASSQNFAEV AVSRSSEIES EVKNILPDSK RQKKESVGVN  300
DSVVTKTNYE PRVIVQTTSA VDIVNDGYRW RKYGQKLVKG NPNPRSYYRC SNAGCPVKKH  360
VERASHDEKV VITTYEGRHD HDMPAGTRTV TQNTQGNNNE SDDDDDESTP QPESANESTG  420
YWRLKTCTGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-68	WRKY family protein