PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024959083.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 1047aa MW: 117310 Da PI: 6.6645

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024959083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.2	6.4e-23	116	217	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv++++L +gD v+F ++++ XP_024959083.1 116 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDQSWTFRHIYRGQPKRHLLTTGWSIFVSSKRLFAGDAVLFV--RDEK 207 99***************************9445444.38********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_024959083.1 208 SQLMLGIRRA 217 778**997 PP
2	Auxin_resp	122.6	2.9e-40	242	324	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d vrW+nS+WrsL+ XP_024959083.1 242 AAHAAANNSPFTIFYNPRASPAEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDGVRWKNSQWRSLQ 324 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence
MLFSGVRKVM NSELWHACAG PMVSLPPVGS LVVYFPQGHS EQVAASMQKD TENIPNYPNL 60 PSKLICMLHN VTLHADAETD EVYAQMTLQP VNKYDQEALL ISDMGLKQNK QPSEFFCKTL 120 TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDQSWTFRH IYRGQPKRHL 180 LTTGWSIFVS SKRLFAGDAV LFVRDEKSQL MLGIRRANRQ QPALSSSVIS SDSMHIGILA 240 AAAHAAANNS PFTIFYNPRA SPAEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY 300 MGTITGISDM DGVRWKNSQW RSLQVGWDES AAGERPTRVS VWEVEPVVTP FYMCPPPFFR 360 QKFPQQPGMP DGDTEIENAY RRGMPWLEEL GMKDASSSVF PGLSLVQWMS MQQNHRFPSM 420 QPGVFPSIVS SNSINGSLSF DDPSKLLSFQ SPNLSVPSPQ SNKANQKNQL ASPLQQISPP 480 PWPQHQQLLH SAQQHQLQQQ QSQDHQHQQQ LYHQQQTSMY SKLQQQQQQM QHHQLQQQQQ 540 QQNHQLQQKQ QQQNHQLQQQ QQKQQISGNT QALQISGSAT RTLSQPLSIS LESQFQHQME 600 QQQGQLRQHN LLLGQAAPQQ SLSEQQQTLQ VLQKLQQQQQ HLFSPSSHVE PQLPLQQQVL 660 PQFQQAKQQS LSQQQLSSNS LSTSTLLQSP QFPSNQLQSQ YKPLVPIRVH PGITDGDAPS 720 CSTSPSTNNC HITPSNLLIK NQQGPSVVGD DSMVDPCSKF VHDLQSQSKS DARIKHELKV 780 PEQPKYKGIA TERSEPTTSV TSYCLDAGGL QQNFSIPNLC LEGDVVQSQT RSDVSFGANM 840 DSLPPDALLS RGFDSQNLMS NYCGPPRDIE AELSAAEISP QSFGMPDISF KPGCSNDIAG 900 NDGGVLGSGL WGNQTQRMRT YTKVQKRGSV GRTIDVTRYK GYEELRHDLA LMFGIEGQLE 960 DAQRTEWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS YCEVQQMSLD GDLGNVPVPN 1020 QASSGTESGN PWRGQYDHEN SAASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence

MLFSGVRKVM NSELWHACAG PMVSLPPVGS LVVYFPQGHS EQVAASMQKD TENIPNYPNL  60
PSKLICMLHN VTLHADAETD EVYAQMTLQP VNKYDQEALL ISDMGLKQNK QPSEFFCKTL  120
TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDQSWTFRH IYRGQPKRHL  180
LTTGWSIFVS SKRLFAGDAV LFVRDEKSQL MLGIRRANRQ QPALSSSVIS SDSMHIGILA  240
AAAHAAANNS PFTIFYNPRA SPAEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY  300
MGTITGISDM DGVRWKNSQW RSLQVGWDES AAGERPTRVS VWEVEPVVTP FYMCPPPFFR  360
QKFPQQPGMP DGDTEIENAY RRGMPWLEEL GMKDASSSVF PGLSLVQWMS MQQNHRFPSM  420
QPGVFPSIVS SNSINGSLSF DDPSKLLSFQ SPNLSVPSPQ SNKANQKNQL ASPLQQISPP  480
PWPQHQQLLH SAQQHQLQQQ QSQDHQHQQQ LYHQQQTSMY SKLQQQQQQM QHHQLQQQQQ  540
QQNHQLQQKQ QQQNHQLQQQ QQKQQISGNT QALQISGSAT RTLSQPLSIS LESQFQHQME  600
QQQGQLRQHN LLLGQAAPQQ SLSEQQQTLQ VLQKLQQQQQ HLFSPSSHVE PQLPLQQQVL  660
PQFQQAKQQS LSQQQLSSNS LSTSTLLQSP QFPSNQLQSQ YKPLVPIRVH PGITDGDAPS  720
CSTSPSTNNC HITPSNLLIK NQQGPSVVGD DSMVDPCSKF VHDLQSQSKS DARIKHELKV  780
PEQPKYKGIA TERSEPTTSV TSYCLDAGGL QQNFSIPNLC LEGDVVQSQT RSDVSFGANM  840
DSLPPDALLS RGFDSQNLMS NYCGPPRDIE AELSAAEISP QSFGMPDISF KPGCSNDIAG  900
NDGGVLGSGL WGNQTQRMRT YTKVQKRGSV GRTIDVTRYK GYEELRHDLA LMFGIEGQLE  960
DAQRTEWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS YCEVQQMSLD GDLGNVPVPN  1020
QASSGTESGN PWRGQYDHEN SAASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein