PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024959078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 30195.3 Da PI: 6.1676 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l d++k++G g W+ + + g+ R++k+c++rw++yl XP_024959078.1 14 KGAWTASEDRILSDYIKLHGEGKWRQLPIKAGLQRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE++l+++++k+lG++ W++Ia++++ gRt++++k++w++ XP_024959078.1 67 RGNISCEEEDLIIRLHKLLGNR-WSLIAKRLP-GRTDNEIKNYWNST 111 677788****************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence |
MGKSPCCSKI WLNKGAWTAS EDRILSDYIK LHGEGKWRQL PIKAGLQRCG KSCRLRWLNY 60 LKPDVKRGNI SCEEEDLIIR LHKLLGNRWS LIAKRLPGRT DNEIKNYWNS TLAKKVCELH 120 NDSYINNRKD KECVNETDLT HIKVVRPKGL RCPKTQFSLH PPPATTNVDE IEDPANAKST 180 DQSSLIYHED NDNPTCFNLD DIDMAMEEGC LLSDLFNMNF TNDQMVKGDD MVSGPSTMDA 240 THSLSKEILD FASIPEIEGE WLSLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-59 | MYB family protein |