PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024958993.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 357aa MW: 41629.3 Da PI: 5.1199

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024958993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179	1.3e-55	10	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL + ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v XP_024958993.1 10 VPPGFRFHPTDEELVAYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLIErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAV 103 69**************************.9***********743432234667******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ k++lvg++ktLvfykgrap+g+ktdW+mheyrle XP_024958993.1 104 YE-KQRLVGMRKTLVFYKGRAPNGKKTDWIMHEYRLE 139 .999*****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MDTIDQSSCV PPGFRFHPTD EELVAYYLRK KVASQKIDLD VIRDIDLYRI EPWDLIERCR 60 IGYEEQNEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAVYEKQRLV GMRKTLVFYK 120 GRAPNGKKTD WIMHEYRLES EENGPPQEEG WVVCRAFKKR ATGHSRNSER CESNYFYEES 180 RRITSATIDD YITTPLSSSF LSTQSFMMCK QELEAAENLN FVQYDHDQSK QLPHLESPSL 240 QSIKRPIISS ISEQDQEYIN QIGGRNARYN NNEMNKVRDW RDLDKFVASQ LSQDPEIKCM 300 GEGVSMSFAE NHDSDLSYMF LQCGSEEDDD GGGKLTGFLT STRSDHFDIE SYIYDNL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MDTIDQSSCV PPGFRFHPTD EELVAYYLRK KVASQKIDLD VIRDIDLYRI EPWDLIERCR  60
IGYEEQNEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAVYEKQRLV GMRKTLVFYK  120
GRAPNGKKTD WIMHEYRLES EENGPPQEEG WVVCRAFKKR ATGHSRNSER CESNYFYEES  180
RRITSATIDD YITTPLSSSF LSTQSFMMCK QELEAAENLN FVQYDHDQSK QLPHLESPSL  240
QSIKRPIISS ISEQDQEYIN QIGGRNARYN NNEMNKVRDW RDLDKFVASQ LSQDPEIKCM  300
GEGVSMSFAE NHDSDLSYMF LQCGSEEDDD GGGKLTGFLT STRSDHFDIE SYIYDNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	1e-136	NAC family protein