PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU29540.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 308aa MW: 34224.5 Da PI: 7.2389

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU29540.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.8e-18	136	190	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k PHU29540.1 136 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALATQLNLRPRQVEVWFQNRRARTK 190 788899***********************************************98 PP
2	HD-ZIP_I/II	126.4	1.3e-40	136	225	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev eLr +l PHU29540.1 136 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALATQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTAENRRLQKEVVELR-AL 225 69*************************************************************************************9.44 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MSGEKEDGLG LSLSLGIMSC PQQNKLKNYI TLSSSTPPPP PLALNLLPFM HHHQSSSGRN 60 DEERGRVRGE IDMNEPARMI VECDNEQDDD DEEENQVIMV SSPNSTVSSV SGKRSHDEGE 120 RTTSSLEDDG GDAAARKKLR LSKEQAAVLE ETFKEHNTLN PKQKLALATQ LNLRPRQVEV 180 WFQNRRARTK LKQTEVDCEY LKRCCENLTA ENRRLQKEVV ELRALKLSPQ LYMNMSPPTT 240 LTMCPQCERV AVSSSSSSAA SSSVNRPSAS RSHHHPEGAL HQAPVPLNKP WAAILAPKTL 300 GVQQRSQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	193	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	3e-71	HD-ZIP family protein