PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU29423.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 731aa MW: 81456.1 Da PI: 5.5876

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU29423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.5	3.5e-13	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien r+ ++ kR++g +KKA+EL +LC++e a ii s+ PHU29423.1 10 FIENINERKSSYKKRQKGFIKKAHELKTLCNVEMAAIICSP 50 8*************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MGRKKVKLAF IENINERKSS YKKRQKGFIK KAHELKTLCN VEMAAIICSP YHIEPKVIPN 60 MVTQKKFTEE RKVKIEEQLR KIRKESRVKD LTNKMYEMLN GKDTQVCMSL NNLNDLDYVL 120 NENIKKVSEM IKGQGGGESS TSNYQQPTIG PMVPSGSIFE GPRDPLLYPT GTPVLVVPLV 180 DPLIIPSGDN FERPRAPLLD SDVASMEMIP SEASSMVPLD YTSQVSQPQI NPSMSLPLMD 240 ASVPMNNNEN YSVGFPTSPP LSEMLDWNDD IIKPARRTET RGNFYVSPED NMDRVRLAHG 300 AQTWSRVATS NCCQGVPLVP TNLSPGGDTP AQSPQGDISN EEFCRSIQLL TQIVVSLSHY 360 SNGARLVPPY PPCQFYGQLH HEFCHEGKNQ CFTYAPAPKD ATSGSDTGLN CLHAPTTRQE 420 LEVSLDIVHV TLRLIKESIG VCGVGMMIPK SALTWTFVLA MVGGMSQPDI LGFFRGYIWR 480 NSGLGPYHIE PKVIPNMVTQ KKFTEERKVK IEEQLRKIRK ENRVKDLTNK MYEMLNGKDT 540 QVCMSLNNLN DLDYVLNENI KKVSEMIKGQ GGGESSTLNY QQPTIGPMVP SGSIFEGPRD 600 PLLYPTGTPV LVVPLVDPLI IPSGDNFERP RAPLLESDVA SMEMIHSEAS SMVPLAYTSQ 660 VSQPQINPSM SLPLMDASVP MNNNENYSVG FPTSPPLSEM LDWNDDIVTL LEDPYFNNIS 720 FQDPRNGNNN F

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MGRKKVKLAF IENINERKSS YKKRQKGFIK KAHELKTLCN VEMAAIICSP YHIEPKVIPN  60
MVTQKKFTEE RKVKIEEQLR KIRKESRVKD LTNKMYEMLN GKDTQVCMSL NNLNDLDYVL  120
NENIKKVSEM IKGQGGGESS TSNYQQPTIG PMVPSGSIFE GPRDPLLYPT GTPVLVVPLV  180
DPLIIPSGDN FERPRAPLLD SDVASMEMIP SEASSMVPLD YTSQVSQPQI NPSMSLPLMD  240
ASVPMNNNEN YSVGFPTSPP LSEMLDWNDD IIKPARRTET RGNFYVSPED NMDRVRLAHG  300
AQTWSRVATS NCCQGVPLVP TNLSPGGDTP AQSPQGDISN EEFCRSIQLL TQIVVSLSHY  360
SNGARLVPPY PPCQFYGQLH HEFCHEGKNQ CFTYAPAPKD ATSGSDTGLN CLHAPTTRQE  420
LEVSLDIVHV TLRLIKESIG VCGVGMMIPK SALTWTFVLA MVGGMSQPDI LGFFRGYIWR  480
NSGLGPYHIE PKVIPNMVTQ KKFTEERKVK IEEQLRKIRK ENRVKDLTNK MYEMLNGKDT  540
QVCMSLNNLN DLDYVLNENI KKVSEMIKGQ GGGESSTLNY QQPTIGPMVP SGSIFEGPRD  600
PLLYPTGTPV LVVPLVDPLI IPSGDNFERP RAPLLESDVA SMEMIHSEAS SMVPLAYTSQ  660
VSQPQINPSM SLPLMDASVP MNNNENYSVG FPTSPPLSEM LDWNDDIVTL LEDPYFNNIS  720
FQDPRNGNNN F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	26	RKKVKLAFIENINERKSSYKKRQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-15	M-type_MADS family protein