PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU29422.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 317aa MW: 35965.4 Da PI: 8.4092 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.8 | 2.8e-13 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien r+ ++ kR++g +KKA+EL +LC++e ii s+ PHU29422.1 10 FIENINERKASYKKRQKGFIKKAHELKTLCNVEMTAIICSP 50 8*************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence |
MGRKKVKLAF IENINERKAS YKKRQKGFIK KAHELKTLCN VEMTAIICSP YHIEPKVIPN 60 NDVAISIFTK FRELPDFKQS KNMVTQKKFT EERKVKIEEQ LRKIRKENRV KDLTNKMYEM 120 LNGKDTQVCM SLNNLNDLDY VINKNIKKVS EMIKGQGGGE SSTSNYQQPT IGPMVPSGSI 180 FERPRDPLLY PTGTPVLMVP LVDPLIIPSG DNFERPRAPL LDSDVASMEM IPSEASSMVP 240 LAYTSQVSQP QINASMSLPL MDASMPMNNN ENYSVGFPMS PPLSEMLDWN DDIVTSLEDP 300 YFNNISFQDP RNGNNNF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 26 | RKKVKLAFIENINERKASYKKRQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-31 | M-type_MADS family protein |