PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU29228.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 214aa MW: 24608.2 Da PI: 9.4414

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU29228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.3	2.4e-29	3	52	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaev +iifs++gklye++s PHU29228.1 3 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIIFSPRGKLYEFAS 52 8***********************************************86 PP
2	K-box	75	2e-25	76	166	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ ++ ++ +qe a L k+ie L++++ +llG++L+s+sl+e +q+e+qLe+s+ iR++K+++++eq+e+l++kek l en +Lr+k+e PHU29228.1 76 QSVEDIQHTKQETASLMKKIELLESSKSKLLGDGLGSCSLEEVKQIEKQLEQSVGIIRARKMQVYREQMERLKEKEKTLLAENVMLREKFE 166 667889**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MRRIENATSR QVTFSKRRNG LLKKAFELSV LCDAEVGLII FSPRGKLYEF ASSSIPEVLD 60 RYKRHTKDKV QPDQIQSVED IQHTKQETAS LMKKIELLES SKSKLLGDGL GSCSLEEVKQ 120 IEKQLEQSVG IIRARKMQVY REQMERLKEK EKTLLAENVM LREKFEGLED RRKSSRQTED 180 VICISGGRSD KSDVETELFI GPPHDSRITR PLLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-63	MIKC_MADS family protein