PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU29223.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 560aa MW: 62028 Da PI: 10.6137

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU29223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	74.2	3.9e-23	405	466	18	79
TCP 18 RdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesss 79 +RR+Rl+a caar+F+L++eLG+++d++ti+WLlq a p+i+ + ++++ + +++ PHU29223.1 405 GGRRIRLPAVCAARVFQLTRELGHKTDGETIQWLLQRAPPSIISTITGTEDNNNPLTRKRKI 466 59***************************************997544434444444222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MEAYKTWVRR NRDYVRQLSS LASGMTWLLP ERFAASEIGP EAVSSVLGMV TTVNEHIIET 60 TPTSVHTSSA ETSFLPLSLC LTLLRDLETL VEVVAEQLYG EDKKWNLIVL TEAAKVCVRL 120 AVFKTTGYKM LLLGGETENL ENSDNLSPQE SMGHSRKPIQ NQGLGANHHQ GLNSWNLEGR 180 AMSALSSFGQ NARTISEPTW LRRVQQHQAH LEPPTKVIRN PSLSTFLFEK GIRGGLFVTG 240 ESMFVLRPLI YVLLLRKYGT RSWFPWFISL AVDLIGNGIL SAITMSQDGR KDQHFQFSKS 300 EKDELKRRKL LWVLYLMRDP FFSKYTRRRL ESTQKIVEPV PVVGFFAASP LRRRRQVAPP 360 LISPKKEPHE TAAKPPIIKV TLPTPTLKPS VPPPPRPSPP PHNGGGRRIR LPAVCAARVF 420 QLTRELGHKT DGETIQWLLQ RAPPSIISTI TGTEDNNNPL TRKRKICSNV VKQKDNHPFA 480 TKLPNNVATV LAPVMPIVMA VGSVLAVQAS MAAAPSTVWL VPQTALIPLT RQSAAAQVNC 540 VSVSPAVALL DISSASVISK

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MEAYKTWVRR NRDYVRQLSS LASGMTWLLP ERFAASEIGP EAVSSVLGMV TTVNEHIIET  60
TPTSVHTSSA ETSFLPLSLC LTLLRDLETL VEVVAEQLYG EDKKWNLIVL TEAAKVCVRL  120
AVFKTTGYKM LLLGGETENL ENSDNLSPQE SMGHSRKPIQ NQGLGANHHQ GLNSWNLEGR  180
AMSALSSFGQ NARTISEPTW LRRVQQHQAH LEPPTKVIRN PSLSTFLFEK GIRGGLFVTG  240
ESMFVLRPLI YVLLLRKYGT RSWFPWFISL AVDLIGNGIL SAITMSQDGR KDQHFQFSKS  300
EKDELKRRKL LWVLYLMRDP FFSKYTRRRL ESTQKIVEPV PVVGFFAASP LRRRRQVAPP  360
LISPKKEPHE TAAKPPIIKV TLPTPTLKPS VPPPPRPSPP PHNGGGRRIR LPAVCAARVF  420
QLTRELGHKT DGETIQWLLQ RAPPSIISTI TGTEDNNNPL TRKRKICSNV VKQKDNHPFA  480
TKLPNNVATV LAPVMPIVMA VGSVLAVQAS MAAAPSTVWL VPQTALIPLT RQSAAAQVNC  540
VSVSPAVALL DISSASVISK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	8e-20	TCP family protein