PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28764.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 93253.6 Da    PI: 5.0309
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.9e-2098153156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t  q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  PHU28764.1  98 KKRYHRHTVRQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 153
                 688899***********************************************998 PP
2START147.31.4e-463035301206
                 HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddke...qWdetlakaetle 83 
                 ela++ ++elvk+ + +ep+W     ++ g+evl  +e s+               ++ea r s+vv+m++ +lv  +ld+++    +   + +a+t++
  PHU28764.1 303 ELALSSMNELVKMCTMGEPLWIWGH-NDSGKEVLNVEEYSRMfpwpvgvkqnsneLRIEATRSSAVVIMNSITLVDAFLDTNKcieLFPSIISRAKTIQ 400
                 578999***************9998.66677777666666667777789999******************************99999999999****** PP

                 EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
       START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                 v++sg      g lqlm++e+q+l+plv+ R+ +f+Ry++q  ++g+w+ivd  +ds  ++   +++   +++pSg++i++++ng+s+vtwveh+++++
  PHU28764.1 401 VVTSGvsehasGSLQLMFMEMQVLTPLVStRECYFLRYCQQnVEEGSWAIVDFPLDSLHNNF-PAPFPYFKRRPSGCIIQDMPNGYSRVTWVEHAEVEE 498
                 *****************************************99**************99998.58888888**************************** PP

                 SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                 + + ++++ +v sg+a+ga++w++ lqrqce+
  PHU28764.1 499 NPVNQIFNNFVTSGMAFGAQRWLSILQRQCER 530
                 ******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MFSDCQLFSS MGMGGNNGVS SESLYSSTIQ NPNFNFMAMG GNNLPFNIFP PNIIPKEKNG  60
LFKSKEEMDS GSGSEHIEGM SGNELELPEQ EQQPPGKKKR YHRHTVRQIQ EMEALFKECP  120
HPDDKQRLKL SQDLGLKPRQ VKFWFQNRRT QMKAQQDRSD NVILRAENDN LKNENYRLQA  180
ALRSIMCPTC GGPAMLGEMG FDEQQLRLEN ARLKEEFERV CCLVSQYNGR GPMQGLGSPP  240
PLLPPSLELD MSITNFPRKF EDQPTMPNCA DMVPVPLLMP DQNNSQFSGG PMIMEEEKSL  300
AMELALSSMN ELVKMCTMGE PLWIWGHNDS GKEVLNVEEY SRMFPWPVGV KQNSNELRIE  360
ATRSSAVVIM NSITLVDAFL DTNKCIELFP SIISRAKTIQ VVTSGVSEHA SGSLQLMFME  420
MQVLTPLVST RECYFLRYCQ QNVEEGSWAI VDFPLDSLHN NFPAPFPYFK RRPSGCIIQD  480
MPNGYSRVTW VEHAEVEENP VNQIFNNFVT SGMAFGAQRW LSILQRQCER LASLMARNIS  540
DLGVIPSPEA RKSLMNLSQR MIKTFCMNIS TSCGQSWTAL SDSLEDTVRI TTRKVTEPGQ  600
PNGLILSAVS TSWLPYNHFQ VFDLLRDERR RAQLDVLSNG NSLHEVAHIA NGSHPGNCIS  660
LLRINVASNS SQSVELMLQE SCTDDSGSLV AYTTVEVDAI QLAMNGEDPS CIPLLPLGFV  720
ITPVNGQTNN INNSDNISSS EANSSAQSSE KRQNLSSIQE YSGGCLLTIG LQVLASTIPT  780
AKLNLSSVTA INHHLCNTVQ QINAALVAFY PESGINAPSS PPPRQPESSK QADENSNSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein