PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28522.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 524aa MW: 58786.6 Da PI: 9.3681

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.7	3.6e-14	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie+k r+v fskR+ng+ KKA+E S L++a+v i+f + gk + y PHU28522.1 15 KLIESKEARTVAFSKRKNGLGKKAKEYSNLTGADVGFILFTQAGKPHSY 63 569*****************************************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MDKRGGKGRQ KIEMKLIESK EARTVAFSKR KNGLGKKAKE YSNLTGADVG FILFTQAGKP 60 HSYGSPSIEK VIDKFHELKQ NDSLQNHIDM SKTNVFEAFE DLRKEVQAFK EKYLDSKMSI 120 DKHMLENRLK QFEAYKSRLD KIKKEIKGIL FCAGLVFCGI SDSDTPTLAA NLGWRLPRRV 180 NDEFHIARGI SDLLGEYQLT QKRVFRPLWF GMLVTAGALV RVVTDNIVPK RIETESSPSK 240 GTSEAARLHP PLYELALQAL SKSGAEYDEH GEKECFKRDD ADANNPSTEE LVKAFSIDRY 300 PVRMQCDGAA DLTGDFVVKS AMGKSFDAFR KILQGQKLDA YFRDSCFGKY LYLPEDNNAH 360 FQMKMNVYPS LVLTNRELKM PFFLTLRSVQ ILSDPKVINR IKMELFGATT ITRKIILDGG 420 LVVVDGAVGG GSGAIVGAND APLTVFKANH YEYDHTGYTD FASPSERSAC KCQDCREKHH 480 VVINAINALT ASVKELTSKR GLIPPKRILF LFAPLEVRLR GEGE

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MDKRGGKGRQ KIEMKLIESK EARTVAFSKR KNGLGKKAKE YSNLTGADVG FILFTQAGKP  60
HSYGSPSIEK VIDKFHELKQ NDSLQNHIDM SKTNVFEAFE DLRKEVQAFK EKYLDSKMSI  120
DKHMLENRLK QFEAYKSRLD KIKKEIKGIL FCAGLVFCGI SDSDTPTLAA NLGWRLPRRV  180
NDEFHIARGI SDLLGEYQLT QKRVFRPLWF GMLVTAGALV RVVTDNIVPK RIETESSPSK  240
GTSEAARLHP PLYELALQAL SKSGAEYDEH GEKECFKRDD ADANNPSTEE LVKAFSIDRY  300
PVRMQCDGAA DLTGDFVVKS AMGKSFDAFR KILQGQKLDA YFRDSCFGKY LYLPEDNNAH  360
FQMKMNVYPS LVLTNRELKM PFFLTLRSVQ ILSDPKVINR IKMELFGATT ITRKIILDGG  420
LVVVDGAVGG GSGAIVGAND APLTVFKANH YEYDHTGYTD FASPSERSAC KCQDCREKHH  480
VVINAINALT ASVKELTSKR GLIPPKRILF LFAPLEVRLR GEGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	8e-19	M-type_MADS family protein