PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28476.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 157aa MW: 17999.4 Da PI: 7.8275

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.7	1.3e-12	4	50	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k r+v fskR+ng+ KKA+ S L +a+v i+f + gk + y PHU28476.1 4 IESKEARTVAFSKRKNGLGKKAKDYSNLIGADVGFILFTQAGKPHSY 50 9*****************************************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence
MNLIESKEAR TVAFSKRKNG LGKKAKDYSN LIGADVGFIL FTQAGKPHSY GSPSIEKIID 60 KFHELKQNNS QQNHTDMSKT NVFEAFEDLR KEVQAFKEKD LGSELPTDKH MLENKLKQFE 120 AYKLRLDKIK NEIKGDVQAE QFKFISEVAL DLEEMNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-15	M-type_MADS family protein