PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28426.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 277aa MW: 31498.3 Da PI: 4.9793

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28426.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++l++ + G +W+++++ g++R++k+c++rw +yl PHU28426.1 14 KGPWTTEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.2	1.3e-15	71	111	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++ +d++++lG++ W++Ia++++ gRt++++k++w+++ PHU28426.1 71 SDAEEKMVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111 778*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MGRQPCCDKL GVKKGPWTTE EDKKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL SDAEEKMVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLLKMG 120 IDPVTHEPLI KEENPTDQPI QESDQNKNND HQQVVVVTAG ATSSELDNSS TSSSSASSSE 180 NSCNESKLVL DTFKENDPLL SCLLEADDAP PLIDSSWELP VKSFDNNNNM TSSWDDESFN 240 WLFDCQDFGI HDFGFDNCFN DVELEVFNTI YDMENKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12350.1	7e-93	MYB family protein