PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU27846.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 708aa    MW: 78142.7 Da    PI: 5.7704
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU27846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.97.6e-1343437071374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlt 97 
                 lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla +  +  ++ +p++ ++    s e l++++++++++P++kf+h+t
  PHU27846.1 343 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALSARLAATLATKPSTSNPKPFNPFPpnSLEILKIYQILYQACPYVKFAHFT 441
                 68****************************************************965555555555555433244************************ PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v ++ledl++++++ 
  PHU27846.1 442 ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTELAHSLHVPFEFHP-VGEQLEDLKPHMFNR 535
                 ****************************************************....9**************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 + gEalaVn+v +lhr++        ++ ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p +s++r+k+E+ ++g+ei+
  PHU27846.1 536 RIGEALAVNSVNRLHRVP--GN----CIGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPGDSSQRAKLEQYIFGPEIM 628
                 *****************9..33....4446********************************************************************* PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n+v+ceg+er+ rhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgy++ e++g+l+lgW+dr+++++SaWr
  PHU27846.1 629 NIVSCEGTERVVRHERLEKWRRVMEGKGFKGVALSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAASAWR 707
                 ******************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    
MSVMSNTLCG NMGTLKNDIK SEVGSLKSEI GSLKSENSYS KLLPDDSLAS SESKKVTPVS  60
SDFELNGSSL APNQVDDDVE IQSPDNSIWE SFFADQLEGD FMISSPIRNL PSPQRASSFS  120
TATTHSNNNN NNNNYYNAYA HHQGIHGQSM MMCSPPRSPL GPNNYNSSNK GKGLSPLQKV  180
FNSPNNQFMQ IESFNLPALE SFLDDDYDKE DLASSYSTLK VSGGGVAGSA SKSFDALSVI  240
PDFLECLALP NSSSNTSGSF VGSLLSNTFS SQLLNQDDEI FQTGSIAPLS QQLHQERQHE  300
KQQKQRPTYV QPPSTQQQQH TQIFNHNLIV AASDQEQDSG LQLVHLLLAC AEAVSKEDYM  360
LARRYLHHLN RVVTPIGDSM QRVASCFTEA LSARLAATLA TKPSTSNPKP FNPFPPNSLE  420
ILKIYQILYQ ACPYVKFAHF TANQAIFEAF EAEERVHVID LDILQGYQWP AFMQALAARP  480
GGAPFLRITG VGPSPEAVRE TGRCLTELAH SLHVPFEFHP VGEQLEDLKP HMFNRRIGEA  540
LAVNSVNRLH RVPGNCIGNL LAMIRDQAPN IVTIVEQEAS HNGPYFLGRF LEALHYYSAI  600
FDSLDATFPG DSSQRAKLEQ YIFGPEIMNI VSCEGTERVV RHERLEKWRR VMEGKGFKGV  660
ALSANAVTQS KILLGLYSCD GYKLTEDNGC LLLGWQDRAI LAASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-97GRAS family protein