PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27565.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 287aa MW: 32416.6 Da PI: 4.5643

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.6	1.4e-20	66	119	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ Fe ++++ e++++LA+klgL+ rqV vWFqNrRa++k PHU27565.1 66 KKRRLSPEQVHLLEKSFEAENKLEPERKTQLAQKLGLQPRQVAVWFQNRRARWK 119 56789************************************************9 PP
2	HD-ZIP_I/II	135.3	2.1e-43	65	156	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ ++++k++++L++e+ PHU27565.1 65 EKKRRLSPEQVHLLEKSFEAENKLEPERKTQLAQKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLLSDFDSIRKDNDQLKSEIV 156 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MGSGHIFFDP SSCHGNMLFL GNGDPLFRGP RSSMLKMEDS SKRRPFFSSP EELYDEEYYD 60 EQSPEKKRRL SPEQVHLLEK SFEAENKLEP ERKTQLAQKL GLQPRQVAVW FQNRRARWKT 120 KQLERDYDQL KSSYDSLLSD FDSIRKDNDQ LKSEIVSLME KLQGKVVGGS VVNEKSEALE 180 VDALTTLQVK VKTEDRLSSG SGGSAVVDEH SPQLVDSGDS YFHSTIDHEE YPGPGGCNIP 240 PPVDGLQSEE DDGSDDGSCH GYLSNVFVAS EEHHHEEGEE PLGWFWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-80	HD-ZIP family protein