PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27282.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 272aa MW: 30280.1 Da PI: 8.2736

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.7e-18	127	181	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+ +++++ +++++LA++l+L rqV vWFqNrRa+ k PHU27282.1 127 RKKLRLTKAQSALLEESFKLHSTLNPKQKQDLAMELSLRPRQVEVWFQNRRARTK 181 788899***********************************************98 PP
2	HD-ZIP_I/II	121.7	3.6e-39	127	216	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k q++lLEesF+ +++L+p++K++la eL l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eL+ +l PHU27282.1 127 RKKLRLTKAQSALLEESFKLHSTLNPKQKQDLAMELSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLHKELQELK-AL 216 69*************************************************************************************9.44 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MGFDDICNTG LVLGLGFSST TDQKSTKITP LASKGPASLT FEPSLTLSLI SGDRTYEQQA 60 TKKVNVTKPS NDHQSADLYR QDSAASSYSN ASVKRERDVG SEETTTEVER VSSRVISDED 120 DDGSNARKKL RLTKAQSALL EESFKLHSTL NPKQKQDLAM ELSLRPRQVE VWFQNRRART 180 KLKQTEVDCE FLKKCCETLT EENRRLHKEL QELKALKIAQ PLYMQLPAAT LTMCPSCERI 240 GGGVGENPSK NPFTIAQKPH FYSPFNNPSA AC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	184	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-94	HD-ZIP family protein